RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TMCO4Q5TGY1 634 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 OTUD1Q5VV17 481 aaPredicted RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 LCN10Q6JVE6 187 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 GFRALQ6UXV0 394 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 MRGPREQ86SM8 312 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 IQUBQ8NA54 791 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 SLC38A9Q8NBW4 561 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 CASKIN2Q8WXE0 1202 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 NR4A3Q92570 626 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 ZNF641Q96N77 438 aaPredicted RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 PPP4R2Q9NY27 417 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 CNOT8Q9UFF9 292 aaKnown RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 HPCAL4Q9UM19 191 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 MORC2Q9Y6X9 1032 aaPredicted RBP15.99■□□□□ 0.15
VPS53-218ENST00000575207 CUBNO60494 3623 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 TLN2Q9Y4G6 2542 aa15.99■□□□□ 0.15
VPS53-218ENST00000575207 K7ELQ4 463 aaPredicted RBP15.98■□□□□ 0.15
VPS53-218ENST00000575207 HSF2BPO75031 334 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 SRGAP2O75044 1071 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 IGHEP01854 428 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 PSMC2P35998 433 aaKnown RBP15.98■□□□□ 0.15
VPS53-218ENST00000575207 GSDMDP57764 484 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 GRM3Q14832 879 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 CEBPEQ15744 281 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 INO80DQ53TQ3 878 aaPredicted RBP15.98■□□□□ 0.15
VPS53-218ENST00000575207 CACHD1Q5VU97 1274 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 AVL9Q8NBF6 648 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 SLC41A2Q96JW4 573 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 COQ10AQ96MF6 247 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 TRIM56Q9BRZ2 755 aaKnown RBP15.98■□□□□ 0.15
VPS53-218ENST00000575207 SEMA5BQ9P283 1151 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 CPNE7Q9UBL6 633 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 TBC1D29Q9UFV1 150 aa15.98■□□□□ 0.15
VPS53-218ENST00000575207 KIR2DS5A0A0G2JLQ3 304 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 A0A0G2JNG1 304 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 KIR2DS3K7RE56 304 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 MEN1O00255 615 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 STX10O60499 249 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 UBXN7O94888 489 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 INHBBP09529 407 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 TYRP1P17643 537 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 ADSLP30566 484 aaPredicted RBP15.97■□□□□ 0.15
VPS53-218ENST00000575207 RHOAP61586 193 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 ACY1Q03154 408 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 KIR2DS5Q14953 304 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 TLR1Q15399 786 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 PLEKHS1Q5SXH7 462 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 DPPA4Q7L190 304 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 NUS1Q96E22 293 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 ALPK1Q96QP1 1244 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 NCAPGQ9BPX3 1015 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 HERPUD2Q9BSE4 406 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 MAGEH1Q9H213 219 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 MAGEF1Q9HAY2 307 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 KCTD5Q9NXV2 234 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 PPARGC1AQ9UBK2 798 aaKnown RBP15.97■□□□□ 0.15
VPS53-218ENST00000575207 PCDHB4Q9Y5E5 795 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 SLC30A1Q9Y6M5 507 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 HIVEP2P31629 2446 aa15.97■□□□□ 0.15
VPS53-218ENST00000575207 KDELR3O43731 214 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 SCRG1O75711 98 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 SLC2A4P14672 509 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 IGFBP2P18065 325 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 UBE2IP63279 158 aaKnown RBP15.96■□□□□ 0.15
VPS53-218ENST00000575207 CUL4BQ13620 913 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 ACOX1Q15067 660 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 PCOLCEQ15113 449 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 MEA1Q16626 185 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 CFAP58Q5T655 872 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 FAAH2Q6GMR7 532 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 DENND1BQ6P3S1 775 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 TMEM200AQ86VY9 491 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 DSELQ8IZU8 1212 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 SIDT2Q8NBJ9 832 aaKnown RBP15.96■□□□□ 0.15
VPS53-218ENST00000575207 ADAMTS18Q8TE60 1221 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 ZNF514Q96K75 400 aaPredicted RBP15.96■□□□□ 0.15
VPS53-218ENST00000575207 EPHA6Q9UF33 1036 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 SH3BGRL2Q9UJC5 107 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 ADAM21Q9UKJ8 722 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 ANK2Q01484 3957 aa15.96■□□□□ 0.15
VPS53-218ENST00000575207 OR5K4A6NMS3 321 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 GRAP2O75791 330 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 F3P13726 295 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 AMD1P17707 334 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 LRMPQ12912 555 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 KCNAB1Q14722 419 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 CBWD6Q4V339 395 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 CBWD3Q5JTY5 395 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 CBWD5Q5RIA9 395 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 DOK6Q6PKX4 331 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 FAM198BQ6UWH4 519 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 TMEM26Q6ZUK4 368 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 NETO2Q8NC67 525 aa15.95■□□□□ 0.14
VPS53-218ENST00000575207 FAM171A2A8MVW0 826 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 BUB1O43683 1085 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 UNC5CO95185 931 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 JCHAINP01591 159 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 CAPZBP47756 277 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 MAPKAPK2P49137 400 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 SLC39A14Q15043 492 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms