RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OCIAD1Q9NX40 245 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 KCTD5Q9NXV2 234 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 CHKBQ9Y259 395 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PCDHGA3Q9Y5H0 932 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 B3GALT1Q9Y5Z6 326 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 PIKFYVEQ9Y2I7 2098 aa6.68□□□□□ -1.34
VPS53-213ENST00000572334 FER1L5A0AVI2 2057 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 SPTAN1Q13813 2472 aaKnown RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 TRBV23OR9-2A0A075B6M9 112 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 A0A1W2PQJ5 194 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 PRR19A6NJB7 356 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 RHPN2P1A8MT19 583 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 INPP4BO15327 924 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 SUV39H1O43463 412 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 WISP1O95388 367 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 CLDN7O95471 211 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 LIFP15018 202 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 SERPINB6P35237 376 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 UGT1A3P35503 534 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ACTR1BP42025 376 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ZNF165P49910 485 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ACTR1AP61163 376 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 GBE1Q04446 702 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 TRA2AQ13595 282 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS53-213ENST00000572334 HENMT1Q5T8I9 393 aaKnown RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 TMEM71Q6P5X7 295 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 XKR5Q6UX68 686 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 USP45Q70EL2 814 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 MARK2Q7KZI7 788 aaKnown RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 ARHGAP22Q7Z5H3 698 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 CNTD1Q8N815 330 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ART4Q93070 314 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 TRIM11Q96F44 468 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 OR2M4Q96R27 311 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 TAAR9Q96RI9 348 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 RIOK2Q9BVS4 552 aaKnown RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 NUP85Q9BW27 656 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 TRIM4Q9C037 500 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ARGLU1Q9NWB6 273 aaPredicted RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 DTLQ9NZJ0 730 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 RCOR3Q9P2K3 495 aaPredicted RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 TBC1D29Q9UFV1 150 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 IP6K2Q9UHH9 426 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ANAPC7Q9UJX3 599 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 PILRAQ9UKJ1 303 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 PRKAB1Q9Y478 270 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ADGRG1Q9Y653 693 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 ICE1Q9Y2F5 2266 aa6.67□□□□□ -1.34
VPS53-213ENST00000572334 RP1L1Q8IWN7 2480 aaPredicted RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 SNRNP200O75643 2136 aaKnown RBP6.67□□□□□ -1.34
VPS53-213ENST00000572334 USP9YO00507 2555 aaPredicted RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 SPTBN1Q01082 2364 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 GOLGA6CA6NDK9 693 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 GOLGA6BA6NDN3 693 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 B4E171 279 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 STMND1H3BQB6 276 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 MATN3O15232 486 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ATP8B1O43520 1251 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 GYPCP04921 128 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ATP1A1P05023 1023 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 GOLGA6DP0CG33 693 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ZNF30P17039 623 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 CCNCP24863 283 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 TSPAN7P41732 249 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SPINT3P49223 89 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 FANCCQ00597 558 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 KCNC4Q03721 635 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ZBTB17Q13105 803 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 QPCTQ16769 361 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 FILIP1LQ4L180 1135 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ANKRD20A8PQ5CZ79 823 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ZNF648Q5T619 568 aaPredicted RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 ANKS6Q68DC2 871 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ALKBH5Q6P6C2 394 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 IYDQ6PHW0 289 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 TIPARPQ7Z3E1 657 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 LRRC49Q8IUZ0 686 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 RAVER1Q8IY67 606 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 NRSN1Q8IZ57 195 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 BBS5Q8N3I7 341 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS53-213ENST00000572334 PAF1Q8N7H5 531 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 EXD1Q8NHP7 514 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SYN2Q92777 582 aaPredicted RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 COL26A1Q96A83 441 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 TADA1Q96BN2 335 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 HDAC11Q96DB2 347 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 RTP4Q96DX8 246 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 TRIB3Q96RU7 358 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 ZNF670Q9BS34 389 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 TACO1Q9BSH4 297 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 DDA1Q9BW61 102 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 PACSIN1Q9BY11 444 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 POLR1EQ9GZS1 481 aaKnown RBP6.66□□□□□ -1.34
VPS53-213ENST00000572334 BRD8Q9H0E9 1235 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 CDH19Q9H159 772 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 CLMPQ9H6B4 373 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 CBX8Q9HC52 389 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 APMAPQ9HDC9 416 aa6.66□□□□□ -1.34
VPS53-213ENST00000572334 SARS2Q9NP81 518 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms