RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CSADQ9Y600 493 aa10.81□□□□□ -0.68
CLK3-226ENST00000569406 PRSS51A0A1B0GVH4 220 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 OR6C70A6NIJ9 312 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PPM1BO75688 479 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 INMTO95050 263 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 APOC1P02654 83 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ABHD2P08910 425 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ACAT1P24752 427 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 POU1F1P28069 291 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 POLR2IP36954 125 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 NSFP46459 744 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 CAPSQ13938 189 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 SEZ6Q53EL9 994 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 LDLRAD1Q5T700 205 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 NXNL2Q5VZ03 156 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 BEND4Q6ZU67 534 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 JAZF1Q86VZ6 243 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 FAM83FQ8NEG4 500 aaPredicted RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 MCPH1Q8NEM0 835 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 OR7A2PQ8NGA2 310 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 OR8H1Q8NGG4 311 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TRIM43Q96BQ3 446 aaPredicted RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 ZNF416Q9BWM5 594 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ZDHHC4Q9NPG8 344 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 DPP3Q9NY33 737 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 GTF2IRD1Q9UHL9 959 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 GMPPBQ9Y5P6 360 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 LACTBL1A8MY62 500 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TOM1L1O75674 476 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 F8A1P23610 371 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PCP4P48539 62 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ZNF252P-AS1Q0IIN9 211 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 XKR3Q5GH77 459 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 COLEC12Q5KU26 742 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 DCAF15Q66K64 600 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ZSWIM9Q86XI8 627 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TBC1D19Q8N5T2 526 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PPP1R13LQ8WUF5 828 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PCNPQ8WW12 178 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 ST8SIA4Q92187 359 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PAFAH2Q99487 392 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ERVK-19Q9WJR5 959 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 KLHL20Q9Y2M5 609 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 KAT6AQ92794 2004 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 CYB561D2O14569 222 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 FSCN2O14926 492 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TFECO14948 347 aaPredicted RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 AKR7A2O43488 359 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PSTPIP1O43586 416 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 MSCO60682 206 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 CST3P01034 146 aaPredicted RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 TCF4P15884 667 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TNFSF9P41273 254 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 RGS7P49802 495 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 NDST1P52848 882 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 DGUOKQ16854 277 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 IQCCQ4KMZ1 466 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PDPK2PQ6A1A2 396 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 CASC4Q6P4E1 433 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 OR8H3Q8N146 312 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 PHTF2Q8N3S3 785 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 TFAP2CQ92754 450 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 SLCO2A1Q92959 643 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ALKBH8Q96BT7 664 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 NXNL1Q96CM4 212 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 RIPOR3Q96MK2 946 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 MMP19Q99542 508 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 ADI1Q9BV57 179 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 FUNDC2Q9BWH2 189 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 SLC13A1Q9BZW2 595 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.8□□□□□ -0.68
CLK3-226ENST00000569406 TXNRD2Q9NNW7 524 aa10.8□□□□□ -0.68
CLK3-226ENST00000569406 GMPR2Q9P2T1 348 aaKnown RBP10.8□□□□□ -0.68
CLK3-226ENST00000569406 EVPLQ92817 2033 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 STX16-NPEPL1H3BU86 382 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 BTN3A3O00478 584 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 COPEO14579 308 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 AXIN1O15169 862 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 SSX4O60224 188 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 RNF224P0DH78 156 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 COX4I1P13073 169 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 IMPDH1P20839 514 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 SSTR1P30872 391 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 PLA2G16P53816 162 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 TEKQ02763 1124 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 ABRAXAS1Q6UWZ7 409 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 SLC16A12Q6ZSM3 486 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 CHSY1Q86X52 802 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 PALM2Q8IXS6 379 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 MCUQ8NE86 351 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 DNERQ8NFT8 737 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 NT5C1BQ96P26 610 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 MNTQ99583 582 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 LRRC19Q9H756 370 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 ZNF556Q9HAH1 456 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 PIH1D1Q9NWS0 290 aaKnown RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 PCDHGA9Q9Y5G4 932 aaKnown RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 TLR3O15455 904 aaKnown RBP10.79□□□□□ -0.68
CLK3-226ENST00000569406 NRP2O60462 931 aa10.79□□□□□ -0.68
CLK3-226ENST00000569406 TOP3BO95985 862 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms