RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CCNE1P24864 410 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SLC6A4P31645 630 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 GALNSP34059 522 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 HTR7P34969 479 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RFC4P35249 363 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RFC1P35251 1148 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 HADHAP40939 763 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CCR10P46092 362 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MTIF2P46199 727 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 RPL5P46777 297 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 PCP4P48539 62 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SLC26A2P50443 739 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 AIF1P55008 147 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 STX17P56962 302 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 NUP107P57740 925 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TSPAN5P62079 268 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KCNJ10P78508 379 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MRPS5P82675 430 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 COG7P83436 770 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 EXOSC10Q01780 885 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 TLE1Q04724 770 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZNF844Q08AG5 666 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 STX3Q13277 289 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SNTA1Q13424 505 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRPC3Q13507 836 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 DOC2AQ14183 400 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PPA1Q15181 289 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRADDQ15628 312 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SMN1Q16637 294 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 CYP2A13Q16696 494 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 DUSP7Q16829 419 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ADCK5Q3MIX3 580 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZACNQ401N2 412 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MINDY4Q4G0A6 757 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KCTD21Q4G0X4 260 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 HSP90AA4PQ58FG1 418 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 DCAF6Q58WW2 860 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 XKR9Q5GH70 373 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 XKR3Q5GH77 459 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MDH1BQ5I0G3 518 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RBM20Q5T481 1227 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 AGAP7PQ5VUJ5 663 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 C1orf146Q5VVC0 180 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PDPK2PQ6A1A2 396 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 C11orf88Q6PI97 169 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CNSTQ6PJW8 725 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 APOA5Q6Q788 366 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CATSPERGQ6ZRH7 1159 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 C1orf122Q6ZSJ8 110 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KRT74Q7RTS7 529 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 GSTA5Q7RTV2 222 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PIGWQ7Z7B1 504 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 GPR149Q86SP6 731 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ASPGQ86U10 573 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SATL1Q86VE3 508 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZNF354CQ86Y25 554 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 HPS6Q86YV9 775 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RHPN2Q8IUC4 686 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZDHHC17Q8IUH5 632 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 EPHX4Q8IUS5 362 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ERI1Q8IV48 349 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 TTC5Q8N0Z6 440 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CNTROBQ8N137 903 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ADSSL1Q8N142 457 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CPA6Q8N4T0 437 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CCDC33Q8N5R6 958 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TBC1D19Q8N5T2 526 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KBTBD3Q8NAB2 608 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SIMC1Q8NDZ2 872 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 IL17RDQ8NFM7 739 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 GRPEL2Q8TAA5 225 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RAB3IL1Q8TBN0 382 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 AGR3Q8TD06 166 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ACTRT2Q8TDY3 377 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RNF139Q8WU17 664 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KBTBD7Q8WVZ9 684 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRIB2Q92519 343 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 INPP5DQ92835 1189 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 OMA1Q96E52 524 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZNF486Q96H40 463 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 PBKQ96KB5 322 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MRGPRX4Q96LA9 322 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 Q96MF0 132 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SERPINB12Q96P63 405 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SLC29A1Q99808 456 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PI4K2AQ9BTU6 479 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRIM62Q9BVG3 475 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZNF717Q9BY31 904 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 MRPS26Q9BYN8 205 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 OR2B2Q9GZK3 357 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 LSG1Q9H089 658 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 DDX47Q9H0S4 455 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 TMEM245Q9H330 911 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CUEDC2Q9H467 287 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 RIOX1Q9H6W3 641 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MVB12BQ9H7P6 319 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MRPL44Q9H9J2 332 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 ERVMER34-1Q9H9K5 563 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TMBIM4Q9HC24 238 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 LZTFL1Q9NQ48 299 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms