RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ABCG8Q9H221 673 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 KLHL21Q9UJP4 597 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 IFT172Q9UG01 1749 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 SYNJ2BP-COX16A0A087WUM0 186 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 LYPLA1O75608 230 aaPredicted RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 MLYCDO95822 493 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 ERCC2P18074 760 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 ACSL1P33121 698 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 PTPN5P54829 565 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 RPP38P78345 283 aaKnown RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 UBE2SQ16763 222 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 LRRC66Q68CR7 880 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 ZNF772Q68DY9 489 aaPredicted RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 BBS12Q6ZW61 710 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 FAM71AQ8IYT1 594 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 CPSF7Q8N684 471 aaKnown RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 PMEPA1Q969W9 287 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 C10orf90Q96M02 699 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 COX16Q9P0S2 106 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 POFUT2Q9Y2G5 429 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 HCN4Q9Y3Q4 1203 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 PCDHGB6Q9Y5F9 930 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 DLG5Q8TDM6 1919 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 IGSF9BQ9UPX0 1349 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 ADAMDEC1O15204 470 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 MSH4O15457 936 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 SERPINA3P01011 423 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 RAB3BP20337 219 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 CASP3P42574 277 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 BTN3A2P78410 334 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 HECTD3Q5T447 861 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 LLGL2Q6P1M3 1020 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 ZNF613Q6PF04 617 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 KCNN1Q92952 543 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 SLC35B4Q969S0 331 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 UTP4Q969X6 686 aaKnown RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 ACTR8Q9H981 624 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 JPH1Q9HDC5 661 aaPredicted RBP6.24□□□□□ -1.41
CLK3-212ENST00000563418 MID1IP1Q9NPA3 183 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 IFT46Q9NQC8 304 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 PNPOQ9NVS9 261 aa6.24□□□□□ -1.41
CLK3-212ENST00000563418 TYROBPO43914 113 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 NDST3O95803 873 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 IGKV5-2P06315 115 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 BDNFP23560 247 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 RGS6P49758 472 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 JAM2P57087 298 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 KCNA10Q16322 511 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 Q3ZCU0 254 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 CHMP1BQ7LBR1 199 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 R3HCC1LQ7Z5L2 792 aaKnown RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 OR2T12Q8NG77 320 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 LILRB1Q8NHL6 650 aaPredicted RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 KCTD7Q96MP8 289 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 ALG5Q9Y673 324 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 A0A0J9YYE9 177 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 H3BM21 787 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 PPEF2O14830 753 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 OIP5O43482 229 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TLL1O43897 1013 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 SLC22A3O75751 556 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 OR56A5P0C7T3 313 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 PPM1FP49593 454 aaPredicted RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 SREBF2Q12772 1141 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 AKIRIN2Q53H80 203 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 FAM160B2Q86V87 743 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 GPALPP1Q8IXQ4 340 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 GAL3ST3Q96A11 431 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TESCQ96BS2 214 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 CERS2Q96G23 380 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 SLC38A2Q96QD8 506 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 FERD3LQ96RJ6 166 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 CDADC1Q9BWV3 514 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 ERVMER34-1Q9H9K5 563 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 NYAP2Q9P242 653 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 MYH9P35579 1960 aaKnown RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 C9IYK1 514 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 EPHB6O15197 1021 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 SULT1C4O75897 302 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 AP2A2O94973 939 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 SNAPINO95295 136 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 PLATP00750 562 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 PPIBP23284 216 aaKnown RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 CHMP24386 653 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 ECHS1P30084 290 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 MNDAP41218 407 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TMEM62Q0P6H9 643 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TROAPQ12815 778 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TDGQ13569 410 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 LSM12Q3MHD2 195 aaKnown RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 NKAPLQ5M9Q1 402 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 USP17L2Q6R6M4 530 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 BAIAP2L2Q6UXY1 529 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 SCARA5Q6ZMJ2 495 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 LNX1Q8TBB1 728 aaPredicted RBP6.23□□□□□ -1.41
CLK3-212ENST00000563418 SLC22A17Q8WUG5 538 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 CCDC107Q8WV48 283 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 TNFAIP8L1Q8WVP5 186 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 DPY30Q9C005 99 aa6.23□□□□□ -1.41
CLK3-212ENST00000563418 KCTD5Q9NXV2 234 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms