RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 MYO18AQ92614 2054 aaKnown RBP2.53□□□□□ -2.01
SPG11-223ENST00000560858 SHROOM3Q8TF72 1996 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MYO16Q9Y6X6 1858 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF541Q9H0D2 1346 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 IGKV6D-21A0A0A0MT36 114 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 A0A1W2PPM1 405 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GSTTP1A0A1W2PQM5 241 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LRRD1A4D1F6 860 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 A8MXQ7 604 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF487B1APH4 448 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TCP10L2B9ZVM9 353 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PI4K2BG5E9Z4 385 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 APOC4-APOC2K7ER74 178 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CHADO15335 359 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 NVLO15381 856 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MAGEC1O60732 1142 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ATP9AO75110 1047 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SNNO75324 88 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 SPAG7O75391 227 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LRCH4O75427 683 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 BANF1O75531 89 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CSDE1O75534 798 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 STAM2O75886 525 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ABLIM3O94929 683 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TJP3O95049 919 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CBX6O95503 412 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LDHAP00338 332 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 CRYABP02511 175 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 APOC2P02655 101 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 EDN1P05305 212 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 KRT7P08729 469 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GSTA2P09210 222 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MMP10P09238 476 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DLDP09622 509 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 WEE2P0C1S8 567 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SUPT20HL2P0C7V6 817 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RARBP10826 455 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PIM1P11309 404 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MTHFD1P11586 935 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 ATF7P17544 494 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 SP100P23497 879 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MARK3P27448 753 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 IL1R2P27930 398 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CCND2P30279 289 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 STIP1P31948 543 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 ICAM3P32942 547 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RPA3P35244 121 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 RPL22P35268 128 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 GJC1P36383 396 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ARL2P36404 184 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 VHLP40337 213 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MAGEA3P43357 314 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PTDSS1P48651 473 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 CTCFP49711 727 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 LIG4P49917 911 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 HTR6P50406 440 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ARSEP51690 589 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CCNHP51946 323 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 AP3M2P53677 418 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 OAZ1P54368 228 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 EEFSECP57772 596 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 KRTAP10-5P60370 271 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RPL7AP62424 266 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MC2RQ01718 297 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 OTUD4Q01804 1114 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 CNTN2Q02246 1040 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GAD2Q05329 585 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 KLC1Q07866 573 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SF3A3Q12874 501 aaKnown RBP eCLIP2.52□□□□□ -2.01
SPG11-223ENST00000560858 PDIA2Q13087 525 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 GPS1Q13098 491 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 MTM1Q13496 603 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GTF2H3Q13889 308 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 KRT72Q14CN4 511 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RCN1Q15293 331 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RBMS2Q15434 407 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 MAPK6Q16659 721 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GSTA3Q16772 222 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ANO4Q32M45 955 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 PTPN20Q4JDL3 420 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TEX44Q53QW1 395 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TAF1BQ53T94 588 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 ACSBG2Q5FVE4 666 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 XKR3Q5GH77 459 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 FNBP1LQ5T0N5 605 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 HHATQ5VTY9 493 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ANKRD22Q5VYY1 191 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 LMBRD2Q68DH5 695 aaPredicted RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 TXNRD3NBQ6F5E7 133 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 OR52E8Q6IFG1 317 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 SPOPLQ6IQ16 392 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DNAJC24Q6P3W2 148 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 ZNF449Q6P9G9 518 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 RFWD3Q6PCD5 774 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 TMEM270Q6UE05 265 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 GSG1LQ6UXU4 331 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 DSTYKQ6XUX3 929 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 KYAT3Q6YP21 454 aaKnown RBP2.52□□□□□ -2.01
SPG11-223ENST00000560858 LRRC74BQ6ZQY2 392 aa2.52□□□□□ -2.01
SPG11-223ENST00000560858 CYP4V2Q6ZWL3 525 aaPredicted RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms