RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 ITGA9Q13797 1035 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 HLA-BQ31612 363 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 GLE1Q53GS7 698 aaKnown RBP21.52■■□□□ 1.04
SNX1-206ENST00000559389 TRIM74Q86UV6 250 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 PHYKPLQ8IUZ5 450 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 MINDY1Q8N5J2 469 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 LRRN4CLQ8ND94 238 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 OR2I1PQ8NGU4 316 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 GLYATL1Q969I3 302 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 FAM122AQ96E09 287 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 CDKN2AIPNLQ96HQ2 116 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 ELF4Q99607 663 aaPredicted RBP21.52■■□□□ 1.04
SNX1-206ENST00000559389 GTPBP2Q9BX10 602 aaKnown RBP21.52■■□□□ 1.04
SNX1-206ENST00000559389 FGF22Q9HCT0 170 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 TMPRSS11EQ9UL52 423 aa21.52■■□□□ 1.04
SNX1-206ENST00000559389 PLXNB3Q9ULL4 1909 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 VPS13AQ96RL7 3174 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 TMEM202A6NGA9 273 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 NMBRP28336 390 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 MC4RP32245 332 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 DRG2P55039 364 aaKnown RBP21.51■■□□□ 1.03
SNX1-206ENST00000559389 NFATC2Q13469 925 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 HIF1AQ16665 826 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 ALG11Q2TAA5 492 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 AASDHQ4L235 1098 aaPredicted RBP21.51■■□□□ 1.03
SNX1-206ENST00000559389 DNAJC21Q5F1R6 531 aaKnown RBP21.51■■□□□ 1.03
SNX1-206ENST00000559389 FNBP1LQ5T0N5 605 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 MICALCLQ6ZW33 695 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 OR56A4Q8NGH8 313 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 BTN2A2Q8WVV5 523 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 PDXPQ96GD0 296 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 SIGLEC10Q96LC7 697 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 TBATAQ96M53 351 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 GAREM1Q9H706 876 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 IL21RQ9HBE5 538 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 SAMD15Q9P1V8 674 aa21.51■■□□□ 1.03
SNX1-206ENST00000559389 PNMA8BQ9ULN7 279 aaPredicted RBP21.51■■□□□ 1.03
SNX1-206ENST00000559389 A0A1B0GTQ1 180 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 ESYT3A0FGR9 886 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 AGAP14A8MT82 685 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 DFNA5O60443 496 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 NME1P15531 152 aaKnown RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 ITGALP20701 1170 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 CA5AP35218 305 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 ATXN3P54252 364 aaPredicted RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 ARL4CP56559 192 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 DHX9Q08211 1270 aaKnown RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 SHBQ15464 509 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 MSS51Q4VC12 460 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 KCTD16Q68DU8 428 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 CASC4Q6P4E1 433 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 AFTPHQ6ULP2 937 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 ENPP7Q6UWV6 458 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 ZDHHC24Q6UX98 284 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 PDIK1LQ8N165 341 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 DDHD1Q8NEL9 900 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 OR1E3Q8WZA6 343 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 PWWP2AQ96N64 755 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 SUDS3Q9H7L9 328 aaPredicted RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 KLQ9UEF7 1012 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 DMGDHQ9UI17 866 aaKnown RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 SLC17A4Q9Y2C5 497 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 OAS3Q9Y6K5 1087 aaKnown RBP21.5■■□□□ 1.03
SNX1-206ENST00000559389 USP34Q70CQ2 3546 aa21.5■■□□□ 1.03
SNX1-206ENST00000559389 FAM237BA0A1B0GVD1 139 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CCDC162PA2VCL2 907 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CDX4O14627 284 aaPredicted RBP21.49■■□□□ 1.03
SNX1-206ENST00000559389 TNFRSF10CO14798 259 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A9O60656 530 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 BANF1O75531 89 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CSF2P04141 144 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A6P19224 532 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A1P22309 533 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A4P22310 534 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 FOXN2P32314 431 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A3P35503 534 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A5P35504 534 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 RXRGP48443 463 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CCT8P50990 548 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 GUCY2DQ02846 1103 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CAV1Q03135 178 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 CBLBQ13191 982 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 TRADDQ15628 312 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 DOK6Q6PKX4 331 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 SNX20Q7Z614 316 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 PHACTR4Q8IZ21 702 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 ZNF398Q8TD17 642 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 ART4Q93070 314 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 HDAC10Q969S8 669 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 MFSD3Q96ES6 412 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 STAMBPL1Q96FJ0 436 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 WDR83Q9BRX9 315 aaKnown RBP21.49■■□□□ 1.03
SNX1-206ENST00000559389 TRIM56Q9BRZ2 755 aaKnown RBP21.49■■□□□ 1.03
SNX1-206ENST00000559389 ASB8Q9H765 288 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A7Q9HAW7 530 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A10Q9HAW8 530 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 UGT1A8Q9HAW9 530 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 DNAAF2Q9NVR5 837 aaKnown RBP21.49■■□□□ 1.03
SNX1-206ENST00000559389 DNAJC28Q9NX36 388 aa21.49■■□□□ 1.03
SNX1-206ENST00000559389 VPS18Q9P253 973 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms