RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GPR162Q16538 588 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 USP41Q3LFD5 358 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 PSAPL1Q6NUJ1 521 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 OFCC1Q8IZS5 231 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 FIBCD1Q8N539 461 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 ATP6V0D2Q8N8Y2 350 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 SIDT2Q8NBJ9 832 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 BRSK1Q8TDC3 778 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 OSBPL11Q9BXB4 747 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 SARS2Q9NP81 518 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 CNOT11Q9UKZ1 510 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 OAZ3Q9UMX2 235 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 DHRS12A0PJE2 317 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 H3BNH8 94 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 BTN3A1O00481 513 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 ADAMTS4O75173 837 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 SGSHP51688 502 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 ACVR1Q04771 509 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 PTPRNQ16849 979 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 PYCR3Q53H96 274 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 GLB1LQ6UWU2 654 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 CHST15Q7LFX5 561 aaPredicted RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 SYVN1Q86TM6 617 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 COLGALT2Q8IYK4 626 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 FBXO39Q8N4B4 442 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 PCYOX1LQ8NBM8 494 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 FUBP1Q96AE4 644 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 FBXL20Q96IG2 436 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 UHRF1Q96T88 793 aaPredicted RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 FBXO44Q9H4M3 255 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 SDR39U1Q9NRG7 319 aaPredicted RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 INTS7Q9NVH2 962 aaKnown RBP12.82□□□□□ -0.36
LDLR-207ENST00000558013 NDUFA13Q9P0J0 144 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 DMTF1Q9Y222 760 aa12.82□□□□□ -0.36
LDLR-207ENST00000558013 ARPC2O15144 300 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 FOXD2O60548 495 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 VNN2O95498 520 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 FGF4P08620 206 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 HOXD9P28356 352 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 HK3P52790 923 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 CTBSQ01459 385 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 DUSP4Q13115 394 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 IRF5Q13568 498 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 TRIP4Q15650 581 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 RNF19BQ6ZMZ0 732 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ERMP1Q7Z2K6 904 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ARHGAP22Q7Z5H3 698 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 TFAP2CQ92754 450 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 TOP1MTQ969P6 601 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 UPF3AQ9H1J1 476 aaKnown RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 CCM2LQ9NUG4 571 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 PCDHB5Q9Y5E4 795 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 SQORQ9Y6N5 450 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 DRGXA6NNA5 263 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 CRCPO75575 148 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ELNP15502 786 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 LBPP18428 481 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ZFP36L2P47974 494 aaKnown RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 FLT3LGP49771 235 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 DSC1Q08554 894 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 PPP4R4Q6NUP7 873 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 KIAA2013Q8IYS2 634 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ZNF786Q8N393 782 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 EFHBQ8N7U6 833 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 OR52B6Q8NGF0 335 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 B4GALNT2Q8NHY0 566 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 EEF1AKMT1Q8WVE0 214 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 EZH1Q92800 747 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 ROPN1LQ96C74 230 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 RMND5BQ96G75 393 aaPredicted RBP12.81□□□□□ -0.36
LDLR-207ENST00000558013 TRIB3Q96RU7 358 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 PDFQ9HBH1 243 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 MYRFQ9Y2G1 1151 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 GPR45Q9Y5Y3 372 aa12.81□□□□□ -0.36
LDLR-207ENST00000558013 ZFC3H1O60293 1989 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 TLR5O60602 858 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 PRLP01236 227 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 SERPINF2P08697 491 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 CDK4P11802 303 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 IL12AP29459 219 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 FKBP1BP68106 108 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 CREB5Q02930 508 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 LCP2Q13094 533 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 CYP51A1Q16850 503 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 PABPC1LQ4VXU2 614 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 TIGD2Q4W5G0 525 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 BLOC1S3Q6QNY0 202 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 LINGO4Q6UY18 593 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 RAB44Q7Z6P3 723 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 RASAL3Q86YV0 1011 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 DCP1BQ8IZD4 617 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 GABPB2Q8TAK5 448 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 C8orf48Q96LL4 319 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 BIRC8Q96P09 236 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 SEPHS2Q99611 448 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 MRPL40Q9NQ50 206 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 PLK2Q9NYY3 685 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 ABCD2Q9UBJ2 740 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 ZFP37Q9Y6Q3 630 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 PATJQ8NI35 1801 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms