RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 BAG6P46379 1132 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 MLLT6P55198 1093 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 EMX2Q04743 252 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 TAF2Q6P1X5 1199 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 LINC00299Q6ZSB3 139 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 FAM43BQ6ZT52 329 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 KDELC2Q7Z4H8 507 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 DPP9Q86TI2 863 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 OR52K2Q8NGK3 314 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ACDQ96AP0 544 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ZFP42Q96MM3 310 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ZNF599Q96NL3 588 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 SERPINB11Q96P15 392 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 TINF2Q9BSI4 451 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 LRRC3Q9BY71 257 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 DERL2Q9GZP9 239 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 NT5MQ9NPB1 228 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 RIC8BQ9NVN3 520 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 COQ6Q9Y2Z9 468 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 PCDHB3Q9Y5E6 796 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 LOC285095A0A1B0GVY8 99 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 FAM234BA2RU67 622 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 SLC22A3O75751 556 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 BCL10O95999 233 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 EPOP01588 193 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 HLA-DPA1P20036 260 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ALDH3A2P51648 485 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 KCNC4Q03721 635 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 PFKFB4Q16877 469 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 FGD3Q5JSP0 725 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 GRAMD4Q6IC98 578 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 NIPAL1Q6NVV3 410 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 DPP10Q8N608 796 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 SLC30A3Q99726 388 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 AARSD1Q9BTE6 412 aaKnown RBP16.19■□□□□ 0.18
SHMT2-231ENST00000557433 HPS4Q9NQG7 708 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 PSME2Q9UL46 239 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 CLEC11AQ9Y240 323 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 WDR37Q9Y2I8 494 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 ZNF711Q9Y462 761 aa16.19■□□□□ 0.18
SHMT2-231ENST00000557433 TMEM221A6NGB7 291 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 HAS3O00219 553 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 CD3EAPO15446 510 aaKnown RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 LDB2O43679 373 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 ABCB7O75027 752 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 COQ9O75208 318 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 KATNA1O75449 491 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 RPP40O75818 363 aaKnown RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 ZBTB11O95625 1053 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 FGF1P05230 155 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 RPS17P08708 135 aaKnown RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 UROSP10746 265 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 BDNFP23560 247 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 PSEN2P49810 448 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 ARSDP51689 593 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 CLCNKBP51801 687 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 GABARAPL2P60520 117 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 RELAQ04206 551 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 OR4D1Q15615 310 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 XKR7Q5GH72 579 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 NOMO2Q5JPE7 1267 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 SIRPB2Q5JXA9 342 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 TTC23Q5W5X9 447 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 PIM3Q86V86 326 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 HID1Q8IV36 788 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 RIMKLAQ8IXN7 391 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 FBXO39Q8N4B4 442 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 BIRC7Q96CA5 298 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 AURKBQ96GD4 344 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 NSMCE2Q96MF7 247 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 TMEM209Q96SK2 561 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 CHID1Q9BWS9 393 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 SPON1Q9HCB6 807 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 NDFIP2Q9NV92 336 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 MARCH4Q9P2E8 410 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 BLOC1S6Q9UL45 172 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 TIMM13Q9Y5L4 95 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-231ENST00000557433 HS3ST4Q9Y661 456 aa16.18■□□□□ 0.18
SHMT2-231ENST00000557433 LCHNA4D1U4 455 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SNX2O60749 519 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SNAP29O95721 258 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 MMP2P08253 660 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 LINC00032P0C843 101 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 HOXB6P17509 224 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 GSTM2P28161 218 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 POLR2JP52435 117 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 FOXA1P55317 472 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ERVK-8P63133 956 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ITKQ08881 620 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 TOP3AQ13472 1001 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 DAG1Q14118 895 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 GRB14Q14449 540 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 SKIV2LQ15477 1246 aaKnown RBP16.17■□□□□ 0.18
SHMT2-231ENST00000557433 TGFBIQ15582 683 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 TYSND1Q2T9J0 566 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 MSANTD2Q6P1R3 559 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 ZNF549Q6P9A3 640 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 OFCC1Q8IZS5 231 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 DNAJB14Q8TBM8 379 aa16.17■□□□□ 0.18
SHMT2-231ENST00000557433 HDAC2Q92769 488 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms