RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PKD2L2Q9NZM6 624 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 BRWD3Q6RI45 1802 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 SYNDIG1LA6NDD5 238 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 ZNF135P52742 658 aaPredicted RBP14.79□□□□□ -0.04
CUX1-215ENST00000556210 C1QTNF8P60827 252 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 CLCQ05315 142 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 OTUD1Q5VV17 481 aaPredicted RBP14.79□□□□□ -0.04
CUX1-215ENST00000556210 CBR4Q8N4T8 237 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 CDKN2AIPNLQ96HQ2 116 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 NSMCE2Q96MF7 247 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 TRIM54Q9BYV2 358 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 PRDM16Q9HAZ2 1276 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 HMX1Q9NP08 348 aaPredicted RBP14.79□□□□□ -0.04
CUX1-215ENST00000556210 VPS45Q9NRW7 570 aa14.79□□□□□ -0.04
CUX1-215ENST00000556210 ATP6V1G1O75348 118 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 NTRK1P04629 796 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 RABL3Q5HYI8 236 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 GCNT7Q6ZNI0 430 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 ARL14EPQ8N8R7 260 aaPredicted RBP14.78□□□□□ -0.04
CUX1-215ENST00000556210 KLHL23Q8NBE8 558 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 OR56A4Q8NGH8 313 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 SOX17Q9H6I2 414 aaPredicted RBP14.78□□□□□ -0.04
CUX1-215ENST00000556210 CD84Q9UIB8 345 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 AGRPO00253 132 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 RPP40O75818 363 aaKnown RBP14.78□□□□□ -0.04
CUX1-215ENST00000556210 BTG3Q14201 252 aaPredicted RBP14.78□□□□□ -0.04
CUX1-215ENST00000556210 ANKRD46Q86W74 232 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 OSER1Q9NX31 292 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 TRIM17Q9Y577 477 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 RAD54BQ9Y620 910 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 DHRS12A0PJE2 317 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 FGF1P05230 155 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 SERPIND1P05546 499 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 ITGALP20701 1170 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 PRKAA2P54646 552 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 HSF5Q4G112 596 aaPredicted RBP14.78□□□□□ -0.04
CUX1-215ENST00000556210 RNF208Q9H0X6 261 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 SMOC2Q9H3U7 446 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 PARVBQ9HBI1 364 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 ARL15Q9NXU5 204 aa14.78□□□□□ -0.04
CUX1-215ENST00000556210 H7C4K7 107 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 NDST3O95803 873 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 HSPA1AP0DMV8 641 aaKnown RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 HSPA1BP0DMV9 641 aaKnown RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 FKBP1BP68106 108 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 CHRNB3Q05901 458 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 SULT2A1Q06520 285 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 BCL2L1Q07817 233 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 LRRC74AQ0VAA2 488 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 ADGRG6Q86SQ4 1221 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 SERINC5Q86VE9 423 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 CILP2Q8IUL8 1156 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 MED8Q96G25 268 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 USP3Q9Y6I4 520 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 MTX2O75431 263 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 HLA-DPA1P20036 260 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 YAP1P46937 504 aaKnown RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 HCAR3P49019 387 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 DGKQP52824 942 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 TRIM25Q14258 630 aaKnown RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 GRB7Q14451 532 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 ACAP2Q15057 778 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 SH2D5Q6ZV89 423 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 KLHDC9Q8NEP7 349 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 PYCR2Q96C36 320 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 DEFB118Q96PH6 123 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 TSSK3Q96PN8 268 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 DPY30Q9C005 99 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 FAM124BQ9H5Z6 455 aaPredicted RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 OCEL1Q9H607 264 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 DOLKQ9UPQ8 538 aa14.77□□□□□ -0.04
CUX1-215ENST00000556210 POLR3HQ9Y535 204 aaPredicted RBP14.77□□□□□ -0.04
CUX1-215ENST00000556210 NRXN2Q9P2S2 1712 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 SDHDO14521 159 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 GRID2O43424 1007 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 NBNO60934 754 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 ESRRBO95718 433 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 PKMP14618 531 aaKnown RBP14.77□□□□□ -0.05
CUX1-215ENST00000556210 MTTPP55157 894 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 MTPNP58546 118 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 VAC14Q08AM6 782 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 GK3PQ14409 553 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 ARHGAP12Q8IWW6 846 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 MRPS31Q92665 395 aaKnown RBP14.77□□□□□ -0.05
CUX1-215ENST00000556210 ELOVL6Q9H5J4 265 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 ZDHHC6Q9H6R6 413 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 ZBTB26Q9HCK0 441 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 TLR6Q9Y2C9 796 aa14.77□□□□□ -0.05
CUX1-215ENST00000556210 CYBBP04839 570 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 COL6A2P12110 1019 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 CKBP12277 381 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 MAGEA3P43357 314 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 TMEM214Q6NUQ4 689 aaKnown RBP14.76□□□□□ -0.05
CUX1-215ENST00000556210 GPRIN3Q6ZVF9 776 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 ZFP28Q8NHY6 868 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 GIPC3Q8TF64 312 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 HSPBAP1Q96EW2 488 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 YME1L1Q96TA2 773 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 PCDHB8Q9UN66 801 aa14.76□□□□□ -0.05
CUX1-215ENST00000556210 URB1O60287 2271 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms