RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DICER1Q9UPY3 1922 aaKnown RBP17.47■□□□□ 0.39
SYNE3-202ENST00000553340 COL4A4P53420 1690 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 IQCA1LA6NCM1 817 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 EEDO75530 441 aaKnown RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 BCL10O95999 233 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MOCS2O96007 188 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 PEX11BO96011 259 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MBL2P11226 248 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ZNF37AP17032 561 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MATN1P21941 496 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 CCR3P51677 355 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 CLCQ05315 142 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 IQSEC1Q6DN90 963 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ZNF549Q6P9A3 640 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 DPP9Q86TI2 863 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 PROSER1Q86XN7 944 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 C3orf58Q8NDZ4 430 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 SCAMP5Q8TAC9 235 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 BIRC7Q96CA5 298 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 PABPC5Q96DU9 382 aaKnown RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ATOH8Q96SQ7 321 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 CHID1Q9BWS9 393 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 TFB2MQ9H5Q4 396 aaKnown RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 GMIPQ9P107 970 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 LEF1Q9UJU2 399 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 CCDC154A6NI56 674 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MEIS3P2A8K0S8 358 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 DYNC1LI2O43237 492 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 TREHO43280 583 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ESRRBO95718 433 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 GLP2RO95838 553 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 JUNBP17275 347 aaPredicted RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 PAGE3Q5JUK9 113 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ARTNQ5T4W7 220 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MARC1Q5VT66 337 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 BROXQ5VW32 411 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 TRUB1Q8WWH5 349 aaKnown RBP17.46■□□□□ 0.39
SYNE3-202ENST00000553340 RNF145Q96MT1 663 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 MUS81Q96NY9 551 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ABHD16BQ9H3Z7 469 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 FANCEQ9HB96 536 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 POPDC3Q9HBV1 291 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 BLOC1S6Q9UL45 172 aa17.46■□□□□ 0.39
SYNE3-202ENST00000553340 ASPDHA6ND91 283 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 THP07101 528 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 ELK4P28324 431 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 HTR1EP28566 365 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 EEF1DP29692 281 aaKnown RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 POLR2IP36954 125 aaKnown RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 CASP2P42575 452 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 DSC2Q02487 901 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TUBA3CQ13748 450 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SIRPB2Q5JXA9 342 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 OTUD3Q5T2D3 398 aaPredicted RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TBPL2Q6SJ96 375 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 KIAA2013Q8IYS2 634 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 PDPRQ8NCN5 879 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 CHPT1Q8WUD6 406 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TBATAQ96M53 351 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TMEM74Q96NL1 305 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 ING2Q9H160 280 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SMOC2Q9H3U7 446 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 AIG1Q9NVV5 245 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SELENONQ9NZV5 590 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 DOLKQ9UPQ8 538 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 KCTD3Q9Y597 815 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 V9GYQ6 96 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 PLXNB2O15031 1838 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TMEM221A6NGB7 291 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SOBPA7XYQ1 873 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 K7EPI3 171 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 COQ9O75208 318 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SLC22A3O75751 556 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SEC14L2O76054 403 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 MRPL19P49406 292 aaKnown RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SUOXP51687 545 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 MAPK10P53779 464 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SLC10A7Q0GE19 358 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 NR1D2Q14995 579 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 MRNIPQ6NTE8 343 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 C14orf80Q86SX3 495 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TMEM199Q8N511 208 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 GTF3C2Q8WUA4 911 aaPredicted RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 RAB2BQ8WUD1 216 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 CASP10Q92851 521 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 TEX37Q96LM6 180 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 KLHL5Q96PQ7 755 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 GAD1Q99259 594 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 NANOGQ9H9S0 305 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SEMA4BQ9NPR2 832 aaPredicted RBP17.45■□□□□ 0.38
SYNE3-202ENST00000553340 PFDN4Q9NQP4 134 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 FNIP2Q9P278 1114 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 SH3BP1Q9Y3L3 701 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 HS3ST4Q9Y661 456 aa17.45■□□□□ 0.38
SYNE3-202ENST00000553340 CD3EAPO15446 510 aaKnown RBP17.44■□□□□ 0.38
SYNE3-202ENST00000553340 LDB2O43679 373 aa17.44■□□□□ 0.38
SYNE3-202ENST00000553340 MMP2P08253 660 aa17.44■□□□□ 0.38
SYNE3-202ENST00000553340 PRR35P0CG20 571 aa17.44■□□□□ 0.38
SYNE3-202ENST00000553340 BCAP31P51572 246 aa17.44■□□□□ 0.38
SYNE3-202ENST00000553340 ADAM17P78536 824 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms