RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 IRF1P10914 325 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 DNAJB2P25686 324 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 HOXC13P31276 330 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 SGO1Q5FBB7 561 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 FAM171A1Q5VUB5 890 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 AFMIDQ63HM1 303 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 SYVN1Q86TM6 617 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 LPCAT1Q8NF37 534 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 FAM81AQ8TBF8 368 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 EEF1AKMT1Q8WVE0 214 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 GABRQQ9UN88 632 aa14.96□□□□□ -0.01
USP28-214ENST00000545540 ASPDHA6ND91 283 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 CBX4O00257 560 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ZNF23P17027 643 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 GSK3BP49841 420 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ENTPD1P49961 510 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 HPCAP84074 193 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 LIPEQ05469 1076 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 SETMARQ53H47 684 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 NADSYN1Q6IA69 706 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MON1AQ86VX9 555 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 PTCD2Q8WV60 388 aaKnown RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 FAR2Q96K12 515 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 TCF12Q99081 682 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ADI1Q9BV57 179 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 GKN1Q9NS71 199 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MED16Q9Y2X0 877 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MOXD2PA6NHM9 499 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 RPL17P18621 184 aaKnown RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 CYP2C18P33260 490 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 HTR6P50406 440 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 PIGFQ07326 219 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 LAPTM5Q13571 262 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 SELPLGQ14242 412 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MSANTD2Q6P1R3 559 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ERMP1Q7Z2K6 904 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 RAB44Q7Z6P3 723 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 RTN4RL1Q86UN2 441 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 HS3ST5Q8IZT8 346 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 UMODL1-AS1Q8N2C9 162 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 C2orf69Q8N8R5 385 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MDGA1Q8NFP4 955 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ATOH8Q96SQ7 321 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 HGH1Q9BTY7 390 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 CCDC68Q9H2F9 335 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 TLR6Q9Y2C9 796 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 GLTPD2A6NH11 291 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 NDUFS3O75489 264 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 CNPP09543 421 aaKnown RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 RHOQP17081 205 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 LBPP18428 481 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 FDXRP22570 491 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 EEF1B2P24534 225 aaKnown RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 IL12AP29459 219 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 OR4D2P58180 307 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 DUSP4Q13115 394 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ZRANB3Q5FWF4 1079 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 FAM45BPQ6NSW5 357 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MRNIPQ6NTE8 343 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 RSPO2Q6UXX9 243 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 TAS2R42Q7RTR8 314 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 KIAA2013Q8IYS2 634 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 FNDC5Q8NAU1 212 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 FAM45AQ8TCE6 357 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 GAB3Q8WWW8 586 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 TFAP2CQ92754 450 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 MTG1Q9BT17 334 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 NACA2Q9H009 215 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ARNT2Q9HBZ2 717 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 ATP13A1Q9HD20 1204 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 PRDM5Q9NQX1 630 aaPredicted RBP14.95□□□□□ -0.02
USP28-214ENST00000545540 EXD2Q9NVH0 621 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 FKBPLQ9UIM3 349 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 UTS2RQ9UKP6 389 aa14.95□□□□□ -0.02
USP28-214ENST00000545540 M0QZQ0 153 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 CLOCKO15516 846 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 AKR1A1P14550 325 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PSMA4P25789 261 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 ZNF157P51786 506 aaPredicted RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 CLCN2P51788 898 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 KCNA10Q16322 511 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 CTXN3Q4LDR2 81 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 XKR5Q6UX68 686 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 SERINC5Q86VE9 423 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PHYKPLQ8IUZ5 450 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PARP8Q8N3A8 854 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 SLC39A13Q96H72 371 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 SUSD3Q96L08 255 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 ALG2Q9H553 416 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 CLK4Q9HAZ1 481 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 CD274Q9NZQ7 290 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 NDUFA13Q9P0J0 144 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 FFAR3O14843 346 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 GPR42O15529 346 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 TMCC1O94876 653 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 IL10P22301 178 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 ELK4P28324 431 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 GDF5P43026 501 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 HSPA13P48723 471 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 SGSHP51688 502 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms