RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ZNF487	B1APH4	448 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TRIM38	O00635	465 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	SCAMP1	O15126	338 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	FFAR2	O15552	330 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	HTRA2	O43464	458 aa	Predicted RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	SIGLEC6	O43699	453 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CAPNS1	P04632	268 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CD48	P09326	243 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	ELFN1	P0C7U0	828 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	GIMD1	P0DJR0	217 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CKMT1A	P12532	417 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	NFKBIA	P25963	317 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	GJC1	P36383	396 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	GARS	P41250	739 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	ARHGAP25	P42331	645 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	SSR1	P43307	286 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	MMP13	P45452	471 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	PEX5	P50542	639 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	SCNN1B	P51168	640 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TAS2R40	P59535	323 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	EIF2B5	Q13144	721 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	MTM1	Q13496	603 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	PAFAH1B3	Q15102	231 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CCDC157	Q569K6	752 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TPRG1L	Q5T0D9	272 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	MARC1	Q5VT66	337 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TIGD7	Q6NT04	549 aa	Predicted RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	ZCCHC8	Q6NZY4	707 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	DPPA4	Q7L190	304 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	VSIG1	Q86XK7	387 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	PROSER1	Q86XN7	944 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	MAP7D3	Q8IWC1	876 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	RHOT2	Q8IXI1	618 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	PGBD5	Q8N414	524 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TEX26	Q8N6G2	289 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	PAF1	Q8N7H5	531 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	FAM181A	Q8N9Y4	354 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	BTN2A2	Q8WVV5	523 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	RFFL	Q8WZ73	363 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TP53INP1	Q96A56	240 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	MRFAP1L1	Q96HT8	127 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CCDC42	Q96M95	316 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	UBL7	Q96S82	380 aa	Predicted RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	ANP32E	Q9BTT0	268 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	HAUS2	Q9NVX0	235 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	NCKIPSD	Q9NZQ3	722 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	STOML1	Q9UBI4	398 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	APOBEC3B	Q9UH17	382 aa	Known RBP	7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	AMACR	Q9UHK6	382 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	INTU	Q9ULD6	942 aa		7.7	□□□□□ -1.18
SNHG1-223	ENST00000545440	TMEM110-MUSTN1	A8MSY1	372 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	AKR1B15	C9JRZ8	316 aa	Predicted RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440		K7ESM1	405 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	TPP1	O14773	563 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	AQP9	O43315	295 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	CP	P00450	1065 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	GP1BA	P07359	652 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	NAT2	P11245	290 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ITIH2	P19823	946 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	HTR1B	P28222	390 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ETV3	P41162	512 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	BLK	P51451	505 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ADK	P55263	362 aa	Known RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	E2F1	Q01094	437 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	TBX2	Q13207	712 aa	Predicted RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	NFATC4	Q14934	902 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	TCEAL1	Q15170	157 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	IFI16	Q16666	785 aa	Known RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	WSCD2	Q2TBF2	565 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ANKRD20A8P	Q5CZ79	823 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ZNF542P	Q5EBM4	170 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	HES3	Q5TGS1	186 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	PRAMEF13	Q5VWM6	474 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	CDPF1	Q6NVV7	123 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ESRP1	Q6NXG1	681 aa	Known RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	KDM7A	Q6ZMT4	941 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	CPNE8	Q86YQ8	564 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	KCTD6	Q8NC69	237 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ATL2	Q8NHH9	583 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	PCDH19	Q8TAB3	1148 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	SLC35G2	Q8TBE7	412 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	MAML1	Q92585	1016 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	HDAC11	Q96DB2	347 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	NXPE2	Q96DL1	559 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	APOLD1	Q96LR9	279 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	NSMCE3	Q96MG7	304 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	ZNF830	Q96NB3	372 aa	Predicted RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	TSGA13	Q96PP4	275 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	CHP1	Q99653	195 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	LRRC61	Q9BV99	259 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	SLC13A1	Q9BZW2	595 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	POLR1E	Q9GZS1	481 aa	Known RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	SEMA6C	Q9H3T2	930 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	MBNL1	Q9NR56	388 aa	Known RBP	7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	SPTLC3	Q9NUV7	552 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	KCTD5	Q9NXV2	234 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	SPAST	Q9UBP0	616 aa		7.69	□□□□□ -1.18
SNHG1-223	ENST00000545440	COQ6	Q9Y2Z9	468 aa		7.69	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms