RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C12orf65Q9H3J6 166 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 COG4Q9H9E3 785 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 RSAD1Q9HA92 442 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 EIF2B3Q9NR50 452 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 TNFRSF10DQ9UBN6 386 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KCNN3Q9UGI6 736 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CPSF3Q9UKF6 684 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 CNOT6Q9ULM6 557 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 DNMT3AQ9Y6K1 912 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 COL4A3Q01955 1670 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 FAM221AA4D161 298 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 M0QZ92 97 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TEX28O15482 410 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KLF4O43474 513 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 DCXO43602 365 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TOM1L1O75674 476 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 RFPL2O75678 378 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SORBS2O94875 1100 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 GUCA1CO95843 209 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 AMHP03971 560 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PRKCGP05129 697 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ETS1P14921 441 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PRKCAP17252 672 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 POLR2CP19387 275 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 LRPAP1P30533 357 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 OPRL1P41146 370 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ETV3P41162 512 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MAPK8P45983 427 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GCLMP48507 274 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 AP3M2P53677 418 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 AP2S1P53680 142 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 SLC25A11Q02978 314 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 UBE3AQ05086 875 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TRAF2Q12933 501 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PRKAA1Q13131 559 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KCNC3Q14003 757 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TFDP2Q14188 446 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 INPP5AQ14642 412 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PDK2Q15119 407 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SHHQ15465 462 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 DGUOKQ16854 277 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 C15orf59Q2T9L4 293 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 C9orf50Q5SZB4 431 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PDE12Q6L8Q7 609 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 HMBOX1Q6NT76 420 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MPZL3Q6UWV2 235 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CD300LGQ6UXG3 332 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HDDC2Q7Z4H3 204 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ZNF786Q8N393 782 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ASCC1Q8N9N2 400 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 TDRD5Q8NAT2 981 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 ZNF540Q8NDQ6 660 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 OR6Q1Q8NGQ2 317 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 OR2T34Q8NGX1 318 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 OR2T3Q8NH03 318 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ACTL9Q8TC94 416 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 BLOC1S5Q8TDH9 187 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MUL1Q969V5 352 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ZNF566Q969W8 418 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CFAP36Q96G28 342 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MRPL4Q9BYD3 311 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 SDCBP2Q9H190 292 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GPRC5CQ9NQ84 441 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.25□□□□□ -1.57
USP28-213ENST00000544967 SMOXQ9NWM0 555 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 STMN3Q9NZ72 180 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TMEM181Q9P2C4 612 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PCDHB4Q9Y5E5 795 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HEMK1Q9Y5R4 338 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 IRAK3Q9Y616 596 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MYOCOSA0A1B0GUC4 107 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HAT1O14929 419 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HOXC11O43248 304 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 GUCY1B2O75343 617 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 RB1P06400 928 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HSD17B1P14061 328 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TCN1P20061 433 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 ACO1P21399 889 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TGM2P21980 687 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 EEF1DP29692 281 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 RRM2P31350 389 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 MRPL19P49406 292 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TPTEP56180 551 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GBE1Q04446 702 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 LRRC74AQ0VAA2 488 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 PSMD5Q16401 504 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CDONQ4KMG0 1287 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 N4BP2L1Q5TBK1 243 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 MROH9Q5TGP6 573 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CCDC81Q6ZN84 652 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 IGDCC3Q8IVU1 814 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ZC3H7AQ8IWR0 971 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TBC1D21Q8IYX1 336 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 POF1BQ8WVV4 589 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SEMA4DQ92854 862 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 KAT5Q92993 513 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.24□□□□□ -1.57
USP28-213ENST00000544967 ILKAPQ9H0C8 392 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 RUBCNLQ9H714 662 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ATP13A3Q9H7F0 1226 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms