RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 PIH1D2Q8WWB5 315 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 SCAMP4Q969E2 229 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 NAP1L5Q96NT1 182 aaPredicted RBP12.72□□□□□ -0.37
USP28-212ENST00000544750 AGAP2Q99490 1192 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 MGME1Q9BQP7 344 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 SNRNP25Q9BV90 132 aaKnown RBP12.72□□□□□ -0.37
USP28-212ENST00000544750 DHX35Q9H5Z1 703 aaKnown RBP12.72□□□□□ -0.37
USP28-212ENST00000544750 NOD2Q9HC29 1040 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 TBC1D29Q9UFV1 150 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 CROTQ9UKG9 612 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 PCDHB3Q9Y5E6 796 aa12.72□□□□□ -0.37
USP28-212ENST00000544750 A0A1B0GTH6 734 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GOLGA6CA6NDK9 693 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GOLGA6BA6NDN3 693 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GOLGA6L3A6NEY3 463 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 FZD6O60353 706 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 SEMA7AO75326 666 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 VPS4BO75351 444 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 RFPL1O75677 317 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 PGLSO95336 258 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 RECKO95980 971 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GOLGA6DP0CG33 693 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 NFKBIAP25963 317 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 HSPA9P38646 679 aaKnown RBP12.71□□□□□ -0.37
USP28-212ENST00000544750 HCAR3P49019 387 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 PMS2P54278 862 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 PTSQ03393 145 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 DPYSQ14117 519 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 ERV3-1Q14264 604 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 SKOR2Q2VWA4 1001 aaPredicted RBP12.71□□□□□ -0.37
USP28-212ENST00000544750 ERMARDQ5T6L9 678 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 MARK2Q7KZI7 788 aaKnown RBP12.71□□□□□ -0.37
USP28-212ENST00000544750 ZNF765Q7L2R6 523 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 TMEM135Q86UB9 458 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GALNT13Q8IUC8 556 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 LZTR1Q8N653 840 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 NEK11Q8NG66 645 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 PDCD6IPQ8WUM4 868 aaKnown RBP12.71□□□□□ -0.37
USP28-212ENST00000544750 SH3KBP1Q96B97 665 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 AP2M1Q96CW1 435 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 SMIM14Q96QK8 99 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 TBC1D10AQ9BXI6 508 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 ZMYND15Q9H091 742 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 EPB41L1Q9H4G0 881 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 GOLGA6AQ9NYA3 693 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 OGFRQ9NZT2 677 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 CD84Q9UIB8 345 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 VPS4AQ9UN37 437 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 PCDHGA6Q9Y5G7 932 aa12.71□□□□□ -0.37
USP28-212ENST00000544750 ABCA12Q86UK0 2595 aa12.71□□□□□ -0.38
USP28-212ENST00000544750 ANKRD62A6NC57 917 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 LILRA5A6NI73 299 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 ENO4A6NNW6 628 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 PDHA1P08559 390 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 GFERP55789 205 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 NFATC2Q13469 925 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 RALGPS1Q5JS13 557 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 LRRC66Q68CR7 880 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 C6orf15Q6UXA7 325 aaPredicted RBP12.7□□□□□ -0.38
USP28-212ENST00000544750 MCOLN2Q8IZK6 566 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 GALNT6Q8NCL4 622 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 CPT1CQ8TCG5 803 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 TRIM55Q9BYV6 548 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 ULBP3Q9BZM4 244 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 MLXIPLQ9NP71 852 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 CUEDC1Q9NWM3 386 aaPredicted RBP12.7□□□□□ -0.38
USP28-212ENST00000544750 CWC15Q9P013 229 aaKnown RBP12.7□□□□□ -0.38
USP28-212ENST00000544750 VPS18Q9P253 973 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 KLHL3Q9UH77 587 aa12.7□□□□□ -0.38
USP28-212ENST00000544750 CNOT6Q9ULM6 557 aaKnown RBP12.7□□□□□ -0.38
USP28-212ENST00000544750 OAS3Q9Y6K5 1087 aaKnown RBP12.7□□□□□ -0.38
USP28-212ENST00000544750 TTLL8A6PVC2 850 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 MAFKO60675 156 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 CREG1O75629 220 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 DNAJB5O75953 348 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 SORBS2O94875 1100 aaKnown RBP12.69□□□□□ -0.38
USP28-212ENST00000544750 PYGLP06737 847 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 SPTBP11277 2137 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 F3P13726 295 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 CTPS1P17812 591 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 MAXP61244 160 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 UBE2IP63279 158 aaKnown RBP12.69□□□□□ -0.38
USP28-212ENST00000544750 SEMA5AQ13591 1074 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 ZNF235Q14590 738 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 IHHQ14623 411 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 NFKBIBQ15653 356 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 ARMC12Q5T9G4 340 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 DCUN1D2Q6PH85 259 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 USP45Q70EL2 814 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 SLC9B2Q86UD5 537 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 PLXDC1Q8IUK5 500 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 EXD1Q8NHP7 514 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 RNF31Q96EP0 1072 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 C9orf72Q96LT7 481 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 PCMTD1Q96MG8 357 aaPredicted RBP12.69□□□□□ -0.38
USP28-212ENST00000544750 WDR24Q96S15 920 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 HERPUD2Q9BSE4 406 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.69□□□□□ -0.38
USP28-212ENST00000544750 PCSK1NQ9UHG2 260 aa12.69□□□□□ -0.38
USP28-212ENST00000544750 PRKAB1Q9Y478 270 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms