RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CFAP99D6REC4 459 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 QSOX1O00391 747 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 RAD51BO15315 384 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 VEGFDO43915 354 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 SRP72O76094 671 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 USP1O94782 785 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 SLC25A14O95258 325 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 PRAMEF1O95521 474 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 ZNF883P0CG24 379 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 PGAM1P18669 254 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 TGM1P22735 817 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 MGAT1P26572 445 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 HNRNPKP61978 463 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 CDK3Q00526 305 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 GUCY2DQ02846 1103 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 CACNG1Q06432 222 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 OLIG2Q13516 323 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 PDE1CQ14123 709 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 SUZ12Q15022 739 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 CALML6Q8TD86 181 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 SCAMP4Q969E2 229 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 GLYATL1Q969I3 302 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 STAMBPL1Q96FJ0 436 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 DPH5Q9H2P9 285 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 BPIFA1Q9NP55 256 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 FZD3Q9NPG1 666 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 CD84Q9UIB8 345 aa17.4■□□□□ 0.38
CLSTN3-210ENST00000540931 AGAP14A8MT82 685 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 GOLGA8MH3BSY2 632 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 SLU7O95391 586 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 TUBBP07437 444 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 MCM3P25205 808 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 CTSKP43235 329 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 RXRGP48443 463 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 CLDN2P57739 230 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 ARHGAP8P85298 464 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 SLC14A1Q13336 389 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 NFATC2Q13469 925 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 GTF2H3Q13889 308 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 INAVAQ3KP66 663 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 MRNIPQ6NTE8 343 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 SDCCAG8Q86SQ7 713 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 TMEM135Q86UB9 458 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 HEATR4Q86WZ0 1026 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 OR13H1Q8NG92 308 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 OR56A4Q8NGH8 313 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 COX14Q96I36 57 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 SMIM14Q96QK8 99 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 EBNA1BP2Q99848 306 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 MYOCQ99972 504 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 ASB8Q9H765 288 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 TRIM39Q9HCM9 518 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 CHRAC1Q9NRG0 131 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 MAD1L1Q9Y6D9 718 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 DGKBQ9Y6T7 804 aa17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 ATXN2Q99700 1313 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-210ENST00000540931 LRRK1Q38SD2 2015 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PLXNA2O75051 1894 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 A0A1B0GVT2 93 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 E7ESA3 106 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 KCNJ13O60928 360 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 RASGRP1O95267 797 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 GSTA2P09210 222 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 GSTM1P09488 218 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 TERF1P54274 439 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PLTPP55058 493 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 GSTM4Q03013 218 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PPARDQ03181 441 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PTPRRQ15256 657 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 ZNF423Q2M1K9 1284 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 FASTKD1Q53R41 847 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 ALS2CLQ60I27 953 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 KIAA0930Q6ICG6 404 aaPredicted RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 CNPY4Q8N129 248 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 NOA1Q8NC60 698 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 DDHD1Q8NEL9 900 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 OR13C4Q8NGS5 318 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 OR4L1Q8NH43 312 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 FUBP1Q96AE4 644 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 DNAJC1Q96KC8 554 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 SIGLEC10Q96LC7 697 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 TCF12Q99081 682 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 ELF4Q99607 663 aaPredicted RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 SLC13A1Q9BZW2 595 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 EPB41L5Q9HCM4 733 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 TREX1Q9NSU2 369 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PIH1D1Q9NWS0 290 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 SYBUQ9NX95 663 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 KLQ9UEF7 1012 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 FKBPLQ9UIM3 349 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 CRLS1Q9UJA2 301 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 PCDHGB2Q9Y5G2 931 aa17.38■□□□□ 0.37
CLSTN3-210ENST00000540931 NEMP2A6NFY4 417 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 SPAG6O75602 509 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 TNFP01375 233 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 CSF2P04141 144 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 WNT1P04628 370 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 IVLP07476 585 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 MC4RP32245 332 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 TTPAP49638 278 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms