RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SDHDO14521 159 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ARPC2O15144 300 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 UBDO15205 165 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 STARD3NLO95772 234 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 OLFM2O95897 454 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 FOSP01100 380 aaPredicted RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 ADRB2P07550 413 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 SUPT20HL2P0C7V6 817 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 MLNP12872 115 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 NPR3P17342 541 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 IL1R2P27930 398 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 HLA-DMAP28067 261 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ATP5OP48047 213 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 SOX9P48436 509 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 RUNX1T1Q06455 604 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CLCA4Q14CN2 919 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 PSMD5Q16401 504 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 BCL7AQ4VC05 210 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 TYW3Q6IPR3 259 aaKnown RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 CLEC14AQ86T13 490 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 GPALPP1Q8IXQ4 340 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ADGRF4Q8IZF3 695 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CLEC4FQ8N1N0 589 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 C2orf69Q8N8R5 385 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 KCTD6Q8NC69 237 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 KBTBD8Q8NFY9 601 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 PPP1R13LQ8WUF5 828 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 LENG9Q96B70 501 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 FAM149B1Q96BN6 582 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 INTS12Q96CB8 462 aaKnown RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 C1orf74Q96LT6 269 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ST6GALNAC4Q9H4F1 302 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CCNB1IP1Q9NPC3 277 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 FAM118AQ9NWS6 357 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 USE1Q9NZ43 259 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 GTF2IRD1Q9UHL9 959 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 NDUFAF1Q9Y375 327 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 LYVE1Q9Y5Y7 322 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ZNF98A6NK75 572 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ERVV-1B6SEH8 477 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 DDCP20711 480 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 OXTRP30559 389 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 RYKP34925 604 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 SPRP35270 261 aaPredicted RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 HMGCLP35914 325 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CDK8P49336 464 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CYP4F2P78329 520 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 CYP4F3Q08477 520 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 DBPQ10586 325 aaPredicted RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 FRG1Q14331 258 aaKnown RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 AAK1Q2M2I8 961 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 BRDTQ58F21 947 aaPredicted RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 PPM1JQ5JR12 505 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 GPATCH4Q5T3I0 446 aaKnown RBP12.38□□□□□ -0.43
USP3-203ENST00000538686 PM20D1Q6GTS8 502 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 LIMS2Q7Z4I7 341 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 FAM83AQ86UY5 434 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 OR4M1Q8NGD0 313 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 SLC22A8Q8TCC7 542 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ZNF518BQ9C0D4 1074 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ENTPD7Q9NQZ7 604 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 ING3Q9NXR8 418 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 FAM8A1Q9UBU6 413 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 GLS2Q9UI32 602 aa12.38□□□□□ -0.43
USP3-203ENST00000538686 PRSS44E7EML9 344 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 F8W810 466 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 UBXN8O00124 270 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 NME4O00746 187 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 TFECO14948 347 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 NPHS1O60500 1241 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 PPP1R11O60927 126 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 PTP4A3O75365 173 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 SLC22A5O76082 557 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 ALPPP05187 535 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 HOXD4P09016 255 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 TNNI3P19429 210 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 PSMB9P28065 219 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 CDH5P33151 784 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 TIE1P35590 1138 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 RGS1Q08116 209 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 ZNF543Q08ER8 600 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 ZNF267Q14586 743 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 PON2Q15165 354 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 MEP1AQ16819 746 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 BTBD16Q32M84 506 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 ZIK1Q3SY52 487 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 ALFQ53S48 1182 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 ARMC4Q5T2S8 1044 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 TIGD7Q6NT04 549 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 ZNF704Q6ZNC4 412 aaPredicted RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 SV2AQ7L0J3 742 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 NRARPQ7Z6K4 114 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 PTRH1Q86Y79 214 aaKnown RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 SLC22A15Q8IZD6 547 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 TAGAPQ8N103 731 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 OR4M2Q8NGB6 313 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 MSANTD3Q96H12 275 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 FAM84AQ96KN4 292 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 MIR1-1HGQ9H1L0 117 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 TOR3AQ9H497 397 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms