RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATP13A5Q4VNC0 1218 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 HS1BP3Q53T59 392 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GLT6D1Q7Z4J2 308 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 C17orf82Q86X59 251 aaPredicted RBP12.87□□□□□ -0.35
VPS28-216ENST00000533806 GKN2Q86XP6 184 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 PDCD7Q8N8D1 485 aaKnown RBP12.87□□□□□ -0.35
VPS28-216ENST00000533806 GPR156Q8NFN8 814 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 COG1Q8WTW3 980 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GLYATL1Q969I3 302 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 MS4A14Q96JA4 679 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 VPS35Q96QK1 796 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 SPATA16Q9BXB7 569 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 LRRC40Q9H9A6 602 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 ETNK1Q9HBU6 452 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 BPIFA1Q9NP55 256 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 KCND1Q9NSA2 647 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 GOLGA6AQ9NYA3 693 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS28-216ENST00000533806 FEZ2Q9UHY8 353 aaPredicted RBP12.87□□□□□ -0.35
VPS28-216ENST00000533806 KLK13Q9UKR3 277 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 KCTD3Q9Y597 815 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 ARL5AQ9Y689 179 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 WDFY3Q8IZQ1 3526 aa12.87□□□□□ -0.35
VPS28-216ENST00000533806 ERI2A8K979 691 aaKnown RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 AGAP14A8MT82 685 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CES2O00748 559 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CHUKO15111 745 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 PSMD3O43242 534 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 LDB2O43679 373 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 BUD23O43709 281 aaKnown RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 KIF5CO60282 957 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 NOBOXO60393 691 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 SLC4A1P02730 911 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 ZSCAN5DPP0CG00 497 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 ETS1P14921 441 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 LPOP22079 712 aaPredicted RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 RPL22P35268 128 aaKnown RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 TNNT3P45378 269 aaPredicted RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 XIAPP98170 497 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CTBSQ01459 385 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 SEMA5AQ13591 1074 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CYP1B1Q16678 543 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 KHDC1Q4VXA5 237 aaKnown RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 ZDHHC20Q5W0Z9 365 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 ALS2CLQ60I27 953 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 GUSBP11Q6P575 273 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 DOK6Q6PKX4 331 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 DHRS13Q6UX07 377 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CCNI2Q6ZMN8 369 aaPredicted RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 ADGRG6Q86SQ4 1221 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 SFTPA2Q8IWL1 248 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 CACTIN-AS1Q8N1I8 211 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 ARL10Q8N8L6 244 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 OSBPL9Q96SU4 736 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 TRIM39Q9HCM9 518 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 HOMER3Q9NSC5 361 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 SPATS2LQ9NUQ6 558 aaKnown RBP12.86□□□□□ -0.35
VPS28-216ENST00000533806 ATXN10Q9UBB4 475 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 SNX12Q9UMY4 172 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 GPR34Q9UPC5 381 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 MSRB2Q9Y3D2 182 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 PLEKHM1Q9Y4G2 1056 aa12.86□□□□□ -0.35
VPS28-216ENST00000533806 TPRP12270 2363 aaKnown RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 PRR19A6NJB7 356 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 C2orf81A6NN90 581 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 GPR89AB7ZAQ6 455 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 FANCGO15287 622 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 NUAK1O60285 661 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 SLC25A14O95258 325 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 IFNB1P01574 187 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 GPR89BP0CG08 455 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 FDFT1P37268 417 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 SPAM1P38567 509 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 GNPDA1P46926 289 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 KCNJ1P48048 391 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 DUSP3P51452 185 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 ZNF140P52738 457 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 DAB2P98082 770 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 E2F1Q01094 437 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 INSM1Q01101 510 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 CCDC173Q0VFZ6 552 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 CAMK2BQ13554 666 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 LRP8Q14114 963 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 NR0B2Q15466 257 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TCEA2Q15560 299 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 ZNF648Q5T619 568 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 CDCP2Q5VXM1 449 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TTC27Q6P3X3 843 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TAF8Q7Z7C8 310 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TMPRSS12Q86WS5 348 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 TAB3Q8N5C8 712 aaPredicted RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 KYQ8NBH2 561 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 OR4K2Q8NGD2 314 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 ACTRT1Q8TDG2 376 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 SCG3Q8WXD2 468 aaKnown RBP12.85□□□□□ -0.35
VPS28-216ENST00000533806 GATA6Q92908 595 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 OR2M4Q96R27 311 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 RMI1Q9H9A7 625 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 SMOXQ9NWM0 555 aa12.85□□□□□ -0.35
VPS28-216ENST00000533806 PAK5Q9P286 719 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms