RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RETP07949 1114 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 CAPN3P20807 821 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 ELF1P32519 619 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 MAN1A1P33908 653 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 SLC16A2P36021 539 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 TSPAN7P41732 249 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 CASP2P42575 452 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 ADPRHP54922 357 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 TROAPQ12815 778 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 NFATC4Q14934 902 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 ZNF484Q5JVG2 852 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 ZNF569Q5MCW4 686 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 RINLQ6ZS11 566 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 SLC16A12Q6ZSM3 486 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 Q6ZTK2 550 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 RASGRP2Q7LDG7 609 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 MDGA2Q7Z553 956 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 TBC1D1Q86TI0 1168 aaPredicted RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 MAML2Q8IZL2 1156 aaPredicted RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 NME8Q8N427 588 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 SLC25A41Q8N5S1 370 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 CCDC191Q8NCU4 936 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 GABPB2Q8TAK5 448 aaPredicted RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 SLC2A12Q8TD20 617 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 PHF21BQ96EK2 531 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 KTI12Q96EK9 354 aaPredicted RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 RRP36Q96EU6 259 aaKnown RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 URB1-AS1Q96HZ7 61 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 GPR63Q9BZJ6 419 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 NOD2Q9HC29 1040 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 PNRC2Q9NPJ4 139 aaKnown RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 SMC4Q9NTJ3 1288 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 LIN7CQ9NUP9 197 aaKnown RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 NCKIPSDQ9NZQ3 722 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 SWAP70Q9UH65 585 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 BARX2Q9UMQ3 279 aaPredicted RBP4.06□□□□□ -1.76
CD44-235ENST00000532339 RCE1Q9Y256 329 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 NEUROG3Q9Y4Z2 214 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 POLQO75417 2590 aa4.06□□□□□ -1.76
CD44-235ENST00000532339 NBPF19A0A087WUL8 3843 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3DA0A087WVF3 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3IA0A087WXS9 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3EA0A087X179 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3KA0A087X1G2 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 VWA3AA6NCI4 1184 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3BA6NDS4 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3FA6NER0 549 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3LB9A6J9 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 MCIDASD6RGH6 385 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 SPRY3O43610 288 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 RB1P06400 928 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 ACAA1P09110 424 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 HNRNPA1P09651 372 aaKnown RBP eCLIP4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3HP0C7X1 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 ARSBP15848 533 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 MT3P25713 68 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 KRT9P35527 623 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 FOXD4Q12950 439 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 GPR18Q14330 331 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 ANKRD1Q15327 319 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 CTXN3Q4LDR2 81 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 OTUD1Q5VV17 481 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 ATG16L1Q676U5 607 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3GQ6DHY5 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 FAAH2Q6GMR7 532 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 NADSYN1Q6IA69 706 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3CQ6IPX1 549 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 CXCL17Q6UXB2 119 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 IGFN1Q86VF2 1251 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 KLBQ86Z14 1044 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 CAMK1DQ8IU85 385 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TBC1D3Q8IZP1 549 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 FAM185AQ8N0U4 392 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 PRR26Q8N8Z3 221 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 IDI2Q9BXS1 227 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 MOV10L1Q9BXT6 1211 aaKnown RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 ALDH8A1Q9H2A2 487 aaPredicted RBP4.05□□□□□ -1.76
CD44-235ENST00000532339 MROH8Q9H579 483 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 TMLHEQ9NVH6 421 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 DLGAP2Q9P1A6 1054 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 RAB23Q9ULC3 237 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 SCINQ9Y6U3 715 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 PTPRSQ13332 1948 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 DOCK2Q92608 1830 aa4.05□□□□□ -1.76
CD44-235ENST00000532339 PTPRQQ9UMZ3 2332 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 CCDC196A0A1B0GTZ2 297 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 DDTLA6NHG4 134 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 MBD3L5A6NJ08 208 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 PRSS47A8MTI9 375 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 C2CD4DB7Z1M9 353 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 CTAGE5O15320 804 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 KRT86O43790 486 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 MMP1P03956 469 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 CSF1P09603 554 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 PEPDP12955 493 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 SP100P23497 879 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 HOXD3P31249 432 aaPredicted RBP4.04□□□□□ -1.76
CD44-235ENST00000532339 PRKAR2BP31323 418 aa4.04□□□□□ -1.76
CD44-235ENST00000532339 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.04□□□□□ -1.76
CD44-235ENST00000532339 CRYZQ08257 329 aaKnown RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms