RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HENMT1Q5T8I9 393 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 ALKBH5Q6P6C2 394 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 WDR74Q6RFH5 385 aaPredicted RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 LUZP1Q86V48 1076 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 ZNF761Q86XN6 746 aaPredicted RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS28-214ENST00000531032 BMPERQ8N8U9 685 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 LPCAT1Q8NF37 534 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 OR10G6Q8NH81 332 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 ZNF564Q8TBZ8 553 aaPredicted RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 JPH3Q8WXH2 748 aaPredicted RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 IQCDQ96DY2 449 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 SLC38A3Q99624 504 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 ASPSCR1Q9BZE9 553 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 CBX8Q9HC52 389 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 PCDH9Q9HC56 1237 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 SARS2Q9NP81 518 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 GEMIN8Q9NWZ8 242 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 OCIAD1Q9NX40 245 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 SLC39A1Q9NY26 324 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 CAPN11Q9UMQ6 739 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 TTLL3Q9Y4R7 772 aa11.26□□□□□ -0.61
VPS28-214ENST00000531032 OAS3Q9Y6K5 1087 aaKnown RBP11.26□□□□□ -0.61
VPS28-214ENST00000531032 UBR5O95071 2799 aaPredicted RBP11.25□□□□□ -0.61
VPS28-214ENST00000531032 C1orf232A0A0U1RR37 186 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 A6NCN8 305 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 FADS2P1A8MWK0 482 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 TERTO14746 1132 aaKnown RBP11.25□□□□□ -0.61
VPS28-214ENST00000531032 SUV39H1O43463 412 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 ATP1A1P05023 1023 aaKnown RBP11.25□□□□□ -0.61
VPS28-214ENST00000531032 MX2P20592 715 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 SPINT3P49223 89 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 CSRP3P50461 194 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 RAB15P59190 212 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 FANCCQ00597 558 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 HHEXQ03014 270 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 GBE1Q04446 702 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 CLCA4Q14CN2 919 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 DCAF12Q5T6F0 453 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 IYDQ6PHW0 289 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 ARHGAP22Q7Z5H3 698 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 FAM129CQ86XR2 697 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 CPNE8Q86YQ8 564 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 MAP7D3Q8IWC1 876 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 IL22RA1Q8N6P7 574 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 PQLC3Q8N755 202 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 KCTD6Q8NC69 237 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 LRRN4Q8WUT4 740 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 HDAC11Q96DB2 347 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 AHCYL2Q96HN2 611 aaKnown RBP11.25□□□□□ -0.61
VPS28-214ENST00000531032 TEFMQ96QE5 360 aaKnown RBP11.25□□□□□ -0.61
VPS28-214ENST00000531032 HERPUD2Q9BSE4 406 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 RMI1Q9H9A7 625 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 TBC1D29Q9UFV1 150 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 ZNHIT2Q9UHR6 403 aa11.25□□□□□ -0.61
VPS28-214ENST00000531032 TRBV23OR9-2A0A075B6M9 112 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 RGSL1A5PLK6 1076 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 EFCAB7A8K855 629 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 PPFIA2O75334 1257 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 PROSCO94903 275 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 ASMTLO95671 621 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 GYPCP04921 128 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 TPM3P06753 285 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 MMP2P08253 660 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 KRT7P08729 469 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 LIFP15018 202 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 GJC1P36383 396 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 EPHA4P54764 986 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 UBASH3AP57075 661 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 TAS2R40P59535 323 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 NFKB2Q00653 900 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 SLC10A2Q12908 348 aaPredicted RBP11.24□□□□□ -0.61
VPS28-214ENST00000531032 NFKBIBQ15653 356 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 QPCTQ16769 361 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 ANKS6Q68DC2 871 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 ATG14Q6ZNE5 492 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 CHST15Q7LFX5 561 aaPredicted RBP11.24□□□□□ -0.61
VPS28-214ENST00000531032 CCDC13Q8IYE1 715 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 CACNA2D3Q8IZS8 1091 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 SH3KBP1Q96B97 665 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 RTP4Q96DX8 246 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 SPRY4Q9C004 299 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 TRIM4Q9C037 500 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 ZMYND15Q9H091 742 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 SLC25A18Q9H1K4 315 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 ADNPQ9H2P0 1102 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 FAM83DQ9H4H8 585 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 STN1Q9H668 368 aaKnown RBP11.24□□□□□ -0.61
VPS28-214ENST00000531032 DTLQ9NZJ0 730 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 PKD2L2Q9NZM6 624 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 UVRAGQ9P2Y5 699 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 IL17BQ9UHF5 180 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 PILRAQ9UKJ1 303 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 KCNK6Q9Y257 313 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 PRKAB1Q9Y478 270 aa11.24□□□□□ -0.61
VPS28-214ENST00000531032 KIR2DS5A0A0G2JLQ3 304 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 A0A0G2JNG1 304 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 ANKRD66B4E2M5 251 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 KIR2DS3K7RE56 304 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 NUAK1O60285 661 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms