RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 VWA3BQ502W6 1294 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 PPP6R3Q5H9R7 873 aaPredicted RBP11.52□□□□□ -0.57
SDCBP-211ENST00000523441 C1QL3Q5VWW1 255 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 LYSMD3Q7Z3D4 306 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 SLC9B2Q86UD5 537 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 PLXDC1Q8IUK5 500 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 AKIRIN1Q9H9L7 192 aaPredicted RBP11.52□□□□□ -0.57
SDCBP-211ENST00000523441 PADI1Q9ULC6 663 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 AP4E1Q9UPM8 1137 aa11.52□□□□□ -0.57
SDCBP-211ENST00000523441 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 F8VZ95 297 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 ZNF185O15231 689 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 SORBS2O94875 1100 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 TIAF1O95411 115 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 SOD1P00441 154 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NSFP46459 744 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 RPL7AP62424 266 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 CDR2Q01850 454 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NAA30Q147X3 362 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 ZNF648Q5T619 568 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 LRRC66Q68CR7 880 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 DPY19L2P1Q6NXN4 242 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 IRGCQ6NXR0 463 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 JMJD6Q6NYC1 403 aaPredicted RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 DNAJC24Q6P3W2 148 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 IYDQ6PHW0 289 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 TRIM48Q8IWZ4 208 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 LZTR1Q8N653 840 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NPWQ8N729 165 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 SH3KBP1Q96B97 665 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 C9orf72Q96LT7 481 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 C5orf34Q96MH7 638 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 RIOK2Q9BVS4 552 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 ING2Q9H160 280 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NOD2Q9HC29 1040 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 SARS2Q9NP81 518 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NLRC4Q9NPP4 1024 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 DONSONQ9NYP3 566 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 CPNE7Q9UBL6 633 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 PCSK1NQ9UHG2 260 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 NOCTQ9UK39 431 aaKnown RBP11.51□□□□□ -0.57
SDCBP-211ENST00000523441 PHTF1Q9UMS5 762 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 C2CD3Q4AC94 2353 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 CROCCQ5TZA2 2017 aa11.51□□□□□ -0.57
SDCBP-211ENST00000523441 LDLRP01130 860 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 CYP1A1P04798 512 aaPredicted RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 UCHL3P15374 230 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 GARSP41250 739 aaKnown RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 PTGIRP43119 386 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 KLK7P49862 253 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 RENBPP51606 427 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 RIPPLY3P57055 190 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 IL10RBQ08334 325 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 ITKQ08881 620 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 IL10RAQ13651 578 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 KCNAB1Q14722 419 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 KYNUQ16719 465 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 CACHD1Q5VU97 1274 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 FAM69BQ5VUD6 431 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 ADAMTSL4Q6UY14 1074 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 USP45Q70EL2 814 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 APLFQ8IW19 511 aaPredicted RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 ARHGAP12Q8IWW6 846 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 PGBD5Q8N414 524 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 CISD2Q8N5K1 135 aaKnown RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 KCTD15Q96SI1 283 aaPredicted RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 PCDHB18PQ96TA0 734 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 TUBGCP2Q9BSJ2 902 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.5□□□□□ -0.57
SDCBP-211ENST00000523441 LHX9Q9NQ69 397 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 OGFRQ9NZT2 677 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 TRIM10Q9UDY6 481 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 SLC30A1Q9Y6M5 507 aa11.5□□□□□ -0.57
SDCBP-211ENST00000523441 POLQO75417 2590 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 WIPF3A6NGB9 483 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 DDX3YO15523 660 aaKnown RBP11.49□□□□□ -0.57
SDCBP-211ENST00000523441 GADD45BO75293 160 aaPredicted RBP11.49□□□□□ -0.57
SDCBP-211ENST00000523441 LRCH4O75427 683 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 UBXN7O94888 489 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 VIPP01282 170 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 PDHA1P08559 390 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 F3P13726 295 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 ERCC2P18074 760 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 NFKBIAP25963 317 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 HNRNPH3P31942 346 aaKnown RBP11.49□□□□□ -0.57
SDCBP-211ENST00000523441 EPHB1P54762 984 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 EPHA4P54764 986 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 CDK18Q07002 472 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 NSUN2Q08J23 767 aaKnown RBP eCLIP11.49□□□□□ -0.57
SDCBP-211ENST00000523441 PTP4A2Q12974 167 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 LRP8Q14114 963 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 ELOAQ14241 798 aaKnown RBP11.49□□□□□ -0.57
SDCBP-211ENST00000523441 CHRNA6Q15825 494 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 MIIPQ5JXC2 388 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 ARMC12Q5T9G4 340 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 DCUN1D2Q6PH85 259 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 CRTC3Q6UUV7 619 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 TECPR1Q7Z6L1 1165 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 PPP1R3BQ86XI6 285 aa11.49□□□□□ -0.57
SDCBP-211ENST00000523441 TICAM1Q8IUC6 712 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms