RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NAT16Q8N8M0 369 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 WDR36Q8NI36 951 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 PHF10Q8WUB8 498 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 SLC35F5Q8WV83 523 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 STARD8Q92502 1023 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 MYO19Q96H55 970 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 TSPAN18Q96SJ8 248 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 GORASP1Q9BQQ3 440 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 NLNQ9BYT8 704 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 EPB41L4BQ9H329 900 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 ATAD3AQ9NVI7 634 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 FKBPLQ9UIM3 349 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 DMTF1Q9Y222 760 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 PNMA8CA0A1B0GUJ8 204 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 STK16O75716 305 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 RPL17P18621 184 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 MAGP20916 626 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 WARSP23381 471 aaKnown RBP12.62□□□□□ -0.39
USP53-209ENST00000514665 PBX3P40426 434 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 SEMG2Q02383 582 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 RAET1GQ6H3X3 334 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 SATL1Q86VE3 508 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 ANKRD46Q86W74 232 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 CRYBG2Q8N1P7 616 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 AMER2Q8N7J2 671 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 UBASH3BQ8TF42 649 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 IRGQQ8WZA9 623 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 SUSD6Q92537 303 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 SIGLEC10Q96LC7 697 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 SLC39A3Q9BRY0 314 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 COQ10BQ9H8M1 238 aa12.62□□□□□ -0.39
USP53-209ENST00000514665 TRAV19A0A0A6YYK7 116 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 G3V2T6 193 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ERAL1O75616 437 aaKnown RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 TRMUO75648 421 aaKnown RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 NADKO95544 446 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 CYP3A5P20815 502 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 GLUD2P49448 558 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 INHBEP58166 350 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 POU5F1Q01860 360 aaKnown RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 SP3Q02447 781 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TAPT1Q6NXT6 567 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 DPP10Q8N608 796 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 C7orf43Q8WVR3 580 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 CCDC3Q9BQI4 270 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 HDHD2Q9H0R4 259 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 RHBGQ9H310 441 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ALG2Q9H553 416 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 BRD9Q9H8M2 597 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 LRTM1Q9HBL6 345 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ATP6V1HQ9UI12 483 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ZMYND8Q9ULU4 1186 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 LYVE1Q9Y5Y7 322 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 A0A0G2JLL6 359 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 ASNA1O43681 348 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 IL1BP01584 269 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 FTH1P02794 183 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 MTHFRP42898 656 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 SLC18A1P54219 525 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 DPYSQ14117 519 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 RGMBQ6NW40 437 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 PRRT2Q7Z6L0 340 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 CROCCP3Q8IVE0 287 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 PQLC3Q8N755 202 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 OR13C4Q8NGS5 318 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 FAXDC2Q96IV6 333 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 BCO2Q9BYV7 579 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 KLHL1Q9NR64 748 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 RAD18Q9NS91 495 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 EHD3Q9NZN3 535 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ENOPH1Q9UHY7 261 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 RAB23Q9ULC3 237 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 MYH15Q9Y2K3 1946 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 SLC7A4O43246 635 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TSPAN19P0C672 248 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 EFNA1P20827 205 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 GPR1P46091 355 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TOP3AQ13472 1001 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 KCNA10Q16322 511 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 VARS2Q5ST30 1063 aaKnown RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 LDLRAP1Q5SW96 308 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TRIQKQ629K1 86 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 KIAA0930Q6ICG6 404 aaPredicted RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 LUZP2Q86TE4 346 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 KRT73Q86Y46 540 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 CYP4Z2PQ8N1L4 340 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 POC5Q8NA72 575 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 SEC14L1Q92503 715 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 NELL1Q92832 810 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ITCHQ96J02 903 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TUBGCP5Q96RT8 1024 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 ASAH2Q9NR71 780 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 OGDHLQ9ULD0 1010 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 H0Y858 1186 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 NRP1O14786 923 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 PRAMEF1O95521 474 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 TGM3Q08188 693 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 SLC10A7Q0GE19 358 aa12.61□□□□□ -0.39
USP53-209ENST00000514665 EIF3MQ7L2H7 374 aaKnown RBP12.61□□□□□ -0.39
USP53-209ENST00000514665 SPATA19Q7Z5L4 167 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms