RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 TADA1Q96BN2 335 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 NAF1Q96HR8 494 aaKnown RBP14.15□□□□□ -0.14
HOXC9-202ENST00000504557 GFM1Q96RP9 751 aaKnown RBP14.15□□□□□ -0.14
HOXC9-202ENST00000504557 APOL2Q9BQE5 337 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 FERMT1Q9BQL6 677 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 FICDQ9BVA6 458 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 FOXP3Q9BZS1 431 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 NRSN2Q9GZP1 204 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 MAGEE1Q9HCI5 957 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 LRIT1Q9P2V4 623 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 ATXN7L1Q9ULK2 861 aaPredicted RBP14.15□□□□□ -0.14
HOXC9-202ENST00000504557 SATB2Q9UPW6 733 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 PCYT1BQ9Y5K3 369 aaPredicted RBP14.15□□□□□ -0.14
HOXC9-202ENST00000504557 ST14Q9Y5Y6 855 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 RNF215Q9Y6U7 377 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 FREM2Q5SZK8 3169 aa14.15□□□□□ -0.14
HOXC9-202ENST00000504557 RHPN2P1A8MT19 583 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 STK10O94804 968 aaKnown RBP14.14□□□□□ -0.15
HOXC9-202ENST00000504557 TJP3O95049 919 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 SLC25A14O95258 325 aaPredicted RBP14.14□□□□□ -0.15
HOXC9-202ENST00000504557 ECEL1O95672 775 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 FGF1P05230 155 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 ACP5P13686 325 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 PSMB4P28070 264 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 XRCC4Q13426 336 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 OLIG2Q13516 323 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 AMZ1Q400G9 498 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 PYCR3Q53H96 274 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 ZNF569Q5MCW4 686 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 CRTC3Q6UUV7 619 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 KDELC1Q6UW63 502 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 CCNJLQ8IV13 435 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 TAB3Q8N5C8 712 aaPredicted RBP14.14□□□□□ -0.15
HOXC9-202ENST00000504557 CCDC110Q8TBZ0 833 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 MRGPRX2Q96LB1 330 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 FCRL5Q96RD9 977 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 VAT1Q99536 393 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 ZMYND15Q9H091 742 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 EPB41L5Q9HCM4 733 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 WDR70Q9NW82 654 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 TRNAU1APQ9NX07 287 aaKnown RBP14.14□□□□□ -0.15
HOXC9-202ENST00000504557 CNOT6Q9ULM6 557 aaKnown RBP14.14□□□□□ -0.15
HOXC9-202ENST00000504557 KCNK6Q9Y257 313 aa14.14□□□□□ -0.15
HOXC9-202ENST00000504557 PMS2P1A4D2B8 440 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 GOLGA6L9A6NEM1 432 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 DDX3YO15523 660 aaKnown RBP14.13□□□□□ -0.15
HOXC9-202ENST00000504557 TLX3O43711 291 aaPredicted RBP14.13□□□□□ -0.15
HOXC9-202ENST00000504557 SNX2O60749 519 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 MTX2O75431 263 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 AGTP01019 485 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 BPIP17213 487 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ALDH4A1P30038 563 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 GSDMDP57764 484 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 MPP3Q13368 585 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 SLC14A2Q15849 920 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ANKRD20A2Q5SQ80 823 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 CERCAMQ5T4B2 595 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ANKRD20A1Q5TYW2 823 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ANKRD20A3Q5VUR7 823 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ITPRIPL1Q6GPH6 555 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 GLT6D1Q7Z4J2 308 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 TMC3Q7Z5M5 1100 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 B3GNT8Q7Z7M8 397 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 GDAP1Q8TB36 358 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 COX14Q96I36 57 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 OR2AG1Q9H205 316 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 GBA3Q9H227 469 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 LRRN3Q9H3W5 708 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 TRHDEQ9UKU6 1024 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 ENTPD2Q9Y5L3 495 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 PKD1L2Q7Z442 2459 aa14.13□□□□□ -0.15
HOXC9-202ENST00000504557 A0A1W2PQM1 296 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 MIF4GDA9UHW6 222 aaKnown RBP14.12□□□□□ -0.15
HOXC9-202ENST00000504557 GLB1P16278 677 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 PTPN7P35236 360 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 GEMP55040 296 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 OR1D5P58170 312 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 CCDC173Q0VFZ6 552 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 SPARCL1Q14515 664 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 HLTFQ14527 1009 aaKnown RBP eCLIP14.12□□□□□ -0.15
HOXC9-202ENST00000504557 PTPRCAPQ14761 206 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 RTP5Q14D33 572 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 SLC1A5Q15758 541 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 OGFOD3Q6PK18 319 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 NLRP8Q86W28 1048 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 ZNF761Q86XN6 746 aaPredicted RBP14.12□□□□□ -0.15
HOXC9-202ENST00000504557 CACTIN-AS1Q8N1I8 211 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 ARL14Q8N4G2 192 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 OR6C4Q8NGE1 309 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 OSGEPL1Q9H4B0 414 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 RDH14Q9HBH5 336 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 LZTFL1Q9NQ48 299 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 ATXN10Q9UBB4 475 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 DKK4Q9UBT3 224 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 EFR3BQ9Y2G0 817 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 ADGRG1Q9Y653 693 aa14.12□□□□□ -0.15
HOXC9-202ENST00000504557 ZNF106Q9H2Y7 1883 aaKnown RBP14.12□□□□□ -0.15
HOXC9-202ENST00000504557 LOC285095A0A1B0GVY8 99 aa14.11□□□□□ -0.15
HOXC9-202ENST00000504557 TCRBV7S2A1N4TA0A589 114 aa14.11□□□□□ -0.15
HOXC9-202ENST00000504557 RGSL1A5PLK6 1076 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms