RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 HIST2H2ACQ16777 129 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 FAM98BQ52LJ0 330 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PYCR3Q53H96 274 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RABL3Q5HYI8 236 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 OTUD3Q5T2D3 398 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 HECTD2Q5U5R9 776 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SYPL2Q5VXT5 272 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SLX4IPQ5VYV7 408 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 AGMOQ6ZNB7 445 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 OTOP3Q7RTS5 596 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PIWIL3Q7Z3Z3 882 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NANOGNBQ7Z5D8 188 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RAB44Q7Z6P3 723 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ISCA2Q86U28 154 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 RIOX2Q8IUF8 465 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ARMC8Q8IUR7 673 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 CLEC4FQ8N1N0 589 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SVOPLQ8N434 492 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 TMEM199Q8N511 208 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SMG8Q8ND04 991 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF555Q8NEP9 628 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 OR13J1Q8NGT2 312 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 TMBIM1Q969X1 311 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 ISG20Q96AZ6 181 aaKnown RBP9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SDCCAG3Q96C92 435 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 NODALQ96S42 347 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 IL12RB2Q99665 862 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 LPIN3Q9BQK8 851 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 BRINP2Q9C0B6 783 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 TOR3AQ9H497 397 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 EHD1Q9H4M9 534 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 GLOD4Q9HC38 313 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SACM1LQ9NTJ5 587 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 AIG1Q9NVV5 245 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SLC2A6Q9UGQ3 507 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 POLG2Q9UHN1 485 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 UGT2A1Q9Y4X1 527 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 PCDHGA8Q9Y5G5 932 aa9.64□□□□□ -0.87
SYNE1-230ENST00000495090 SBF1O95248 1867 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 SYNJ2BP-COX16A0A087WUM0 186 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ASPDHA6ND91 283 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 I6L893 689 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 M0QX08 132 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 HUS1O60921 280 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 PAPSS2O95340 614 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ARIH2O95376 493 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 NDST3O95803 873 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 F9P00740 461 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 CHRNA1P02708 482 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 BMP4P12644 408 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 HGFP14210 728 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 NCK1P16333 377 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 IL7RP16871 459 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 NPR3P17342 541 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 CHRM3P20309 590 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 SERPINB1P30740 379 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 RYKP34925 604 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZFP36L2P47974 494 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 PPP5CP53041 499 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 TPTEP56180 551 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 YBX1P67809 324 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 PPP2R2BQ00005 443 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 KCTD2Q14681 263 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 FBXO47Q5MNV8 452 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 C9orf57Q5W0N0 161 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF280DQ6N043 979 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 TMEM214Q6NUQ4 689 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 UGT3A1Q6NUS8 523 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 TUBA3EQ6PEY2 450 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 EFL1Q7Z2Z2 1120 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 RNF135Q8IUD6 432 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZDHHC13Q8IUH4 622 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 MMAAQ8IVH4 418 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 KIAA2013Q8IYS2 634 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 LGI2Q8N0V4 545 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 DPP10Q8N608 796 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 DNAJB14Q8TBM8 379 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 FBLIM1Q8WUP2 373 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF560Q96MR9 790 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 RNF145Q96MT1 663 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 TSPAN18Q96SJ8 248 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 FICDQ9BVA6 458 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 OSBPL10Q9BXB5 764 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 COX16Q9P0S2 106 aa9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZFC3H1O60293 1989 aaKnown RBP9.63□□□□□ -0.87
SYNE1-230ENST00000495090 ZNF236Q9UL36 1845 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 MN1Q10571 1320 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SAGE2PA6NJ88 616 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 M0R3G1 203 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SLC1A7O00341 560 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 MRPS14O60783 128 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 SOAT2O75908 522 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 FYNP06241 537 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 HOXB6P17509 224 aaKnown RBP9.62□□□□□ -0.87
SYNE1-230ENST00000495090 LMO2P25791 158 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 GRIK1P39086 918 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PNPLA4P41247 253 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 PHC1P78364 1004 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 Q3C1V9 767 aa9.62□□□□□ -0.87
SYNE1-230ENST00000495090 ZIK1Q3SY52 487 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms