RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 LINGO4Q6UY18 593 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 MIPOL1Q8TD10 442 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 GAB3Q8WWW8 586 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 WBP2Q969T9 261 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 RMND5BQ96G75 393 aaPredicted RBP16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 THEGQ9P2T0 379 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 PCDHGC4Q9Y5F7 938 aa16.46■□□□□ 0.22
CCDC88B-210ENST00000494566 SYN3O14994 580 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 HTRA2O43464 458 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 SRP72O76094 671 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 ALDH2P05091 517 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 SNRPB2P08579 225 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 ALDOCP09972 364 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CD1DP15813 335 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 HOXD9P28356 352 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 NR1H2P55055 460 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CTBSQ01459 385 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 PRKCQQ04759 706 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 MRPL58Q14197 206 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 GPNMBQ14956 572 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 DHFR2Q86XF0 187 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CHERPQ8IWX8 916 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CD99L2Q8TCZ2 262 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CASD1Q96PB1 797 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 OLAHQ9NV23 265 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 RSL24D1Q9UHA3 163 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CROTQ9UKG9 612 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 PCDHB7Q9Y5E2 793 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 ZFC3H1O60293 1989 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 BOLA2-SMG1P6H3BVE0 249 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 ENPP3O14638 875 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 MAGEA11P43364 429 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 LRP8Q14114 963 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 PARP15Q460N3 678 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 OTUD3Q5T2D3 398 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 XKR5Q6UX68 686 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 OR4K2Q8NGD2 314 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 OR4L1Q8NH43 312 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 ASB9Q96DX5 294 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM74Q96NL1 305 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 LTB4R2Q9NPC1 389 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 SPAG4Q9NPE6 437 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 IL37Q9NZH6 218 aa16.45■□□□□ 0.22
CCDC88B-210ENST00000494566 CDH23Q9H251 3354 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 FAM92AA1XBS5 289 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 CBX4O00257 560 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 NRP2O60462 931 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 BAIAP3O94812 1187 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 PAPSS2O95340 614 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 IGLV3-27P01718 113 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 PCNAP12004 261 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 RABL3Q5HYI8 236 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 C6orf10Q5SRN2 563 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 GPR107Q5VW38 600 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 LRRC8DQ7L1W4 858 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 EFHBQ8N7U6 833 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TRPC4APQ8TEL6 797 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TADA1Q96BN2 335 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 ZFRQ96KR1 1074 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 C1orf50Q9BV19 199 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 ZNF696Q9H7X3 374 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 MEAF6Q9HAF1 191 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM165Q9HC07 324 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 EML4Q9HC35 981 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 MID1IP1Q9NPA3 183 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 CATSPERZQ9NTU4 200 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SMOXQ9NWM0 555 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM161AQ9NX61 479 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SLAMF8Q9P0V8 285 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 MYRFQ9Y2G1 1151 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC38A8A6NNN8 435 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 INPP4BO15327 924 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 H6PDO95479 791 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SERPINF2P08697 491 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 IMPDH1P20839 514 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 HK2P52789 917 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SP3Q02447 781 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 APOFQ13790 326 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TTC33Q6PID6 262 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 PAQR3Q6TCH7 311 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 LRRC43Q8N309 656 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC30A3Q99726 388 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 PDFQ9HBH1 243 aa16.44■□□□□ 0.22
CCDC88B-210ENST00000494566 TBKBP1A7MCY6 615 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 RPP40O75818 363 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 GFAPP14136 432 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 ZNF37AP17032 561 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 CCR3P51677 355 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 GNA12Q03113 381 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 GPR17Q13304 367 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 RPS6KA2Q15349 733 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 FAM45BPQ6NSW5 357 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 KLHL35Q6PF15 583 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 SETD3Q86TU7 594 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 FUNDC1Q8IVP5 155 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 FIBCD1Q8N539 461 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 MDGA1Q8NFP4 955 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 FAM45AQ8TCE6 357 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 CDKN2AIPNLQ96HQ2 116 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 SCLYQ96I15 445 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms