RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 FIG4Q92562 907 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 NAF1Q96HR8 494 aaKnown RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 QRFPRQ96P65 431 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 IL17FQ96PD4 163 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 SDF4Q9BRK5 362 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 GAREM1Q9H706 876 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 WDR26Q9H7D7 661 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 LTB4R2Q9NPC1 389 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 BLOC1S4Q9NUP1 217 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 UBA2Q9UBT2 640 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 FBXL2Q9UKC9 423 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 POU2F3Q9UKI9 436 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 PADI1Q9ULC6 663 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 KLHL20Q9Y2M5 609 aa4.83□□□□□ -1.64
HMGB1P38-201ENST00000490557 ANKRD18BA2A2Z9 1011 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 EIF4E1BA6NMX2 242 aaKnown RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 SMTNL1A8MU46 457 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 SLC16A5O15375 505 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 DAB1O75553 588 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 HIST1H2ABP04908 130 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 ACTN1P12814 892 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 HIST1H2ADP20671 130 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 USP8P40818 1118 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 CDH8P55286 799 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 TAS2R40P59535 323 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 POU3F1Q03052 451 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 SIM2Q14190 667 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 ZNF805Q5CZA5 627 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 CLEC4GQ6UXB4 293 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 HIST3H2AQ7L7L0 130 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 SDCCAG8Q86SQ7 713 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 EXOC3L1Q86VI1 746 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 BEST3Q8N1M1 668 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 TAAR8Q969N4 342 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 CDCA5Q96FF9 252 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 ELMOD3Q96FG2 381 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 FAM84BQ96KN1 310 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 PPP1R13BQ96KQ4 1090 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 BARD1Q99728 777 aaKnown RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 MAK16Q9BXY0 300 aaKnown RBP4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 PIGMQ9H3S5 423 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 UBTD1Q9HAC8 227 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 TBC1D22BQ9NU19 505 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 HAUS2Q9NVX0 235 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 COPG2Q9UBF2 871 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 ACSL5Q9ULC5 683 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 PROCRQ9UNN8 238 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 CLIC4Q9Y696 253 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 RUSC2Q8N2Y8 1516 aa4.82□□□□□ -1.64
HMGB1P38-201ENST00000490557 IGHV4OR15-8A0A075B7B6 117 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 FRMD3A2A2Y4 597 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 PTP4A3O75365 173 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 PPP1R3DO95685 299 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 RB1P06400 928 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 SRPRAP08240 638 aaKnown RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 SNRNP70P08621 437 aaKnown RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 MAPK4P31152 587 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 CASP2P42575 452 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 AMPHP49418 695 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 CAMPP49913 170 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 DRG2P55039 364 aaKnown RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 RPL36AP83881 106 aaKnown RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 IKQ13123 557 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 LRIF1Q5T3J3 769 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 WDR78Q5VTH9 848 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 TRNP1Q6NT89 227 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 CHST9Q7L1S5 443 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 CCDC190Q86UF4 302 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 ODF3L1Q8IXM7 274 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 ZNF34Q8IZ26 560 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 HM13Q8TCT9 377 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 DUSP19Q8WTR2 217 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 CTAGE1Q96RT6 745 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 TREX2Q9BQ50 279 aaPredicted RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 PLK3Q9H4B4 646 aa4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 DDX31Q9H8H2 851 aaKnown RBP4.81□□□□□ -1.64
HMGB1P38-201ENST00000490557 PTPRCP08575 1304 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 PDS5AQ29RF7 1337 aaKnown RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 EME2A4GXA9 379 aaPredicted RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 VILLO15195 856 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 OGG1O15527 345 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 ANXA7P20073 488 aaKnown RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 S1PR1P21453 382 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 CORO1AP31146 461 aaKnown RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 UBA7P41226 1012 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 EIF5P55010 431 aaKnown RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 DECR1Q16698 335 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 CCDC96Q2M329 555 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 TMEM35AQ53FP2 167 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 ZNF280DQ6N043 979 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 BRAT1Q6PJG6 821 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 DCP1BQ8IZD4 617 aaKnown RBP4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 ADGRF2Q8IZF7 708 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 HMGCLL1Q8TB92 370 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 PPP4R1Q8TF05 950 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 PGAM5Q96HS1 289 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 EPB41L5Q9HCM4 733 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 PLSCR4Q9NRQ2 329 aa4.8□□□□□ -1.64
HMGB1P38-201ENST00000490557 SETD4Q9NVD3 440 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms