RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PRKAB1Q9Y478 270 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 TTLL3Q9Y4R7 772 aa12.3□□□□□ -0.44
CPSF3-204ENST00000489403 OAS3Q9Y6K5 1087 aaKnown RBP12.3□□□□□ -0.44
CPSF3-204ENST00000489403 A8MU76 341 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 FADS2P1A8MWK0 482 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 CYP1A2P05177 515 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 HLA-DQB2P05538 268 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 CCNCP24863 283 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 GJC1P36383 396 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ANP32AP39687 249 aaKnown RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 SSR1P43307 286 aaKnown RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 PPM1FP49593 454 aaPredicted RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 POLE2P56282 527 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 NIPAL4Q0D2K0 466 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 IFI16Q16666 785 aaKnown RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 SNAP47Q5SQN1 464 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 HENMT1Q5T8I9 393 aaKnown RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ARHGAP22Q7Z5H3 698 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 RAVER1Q8IY67 606 aaKnown RBP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 LPCAT1Q8NF37 534 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ARRDC2Q8TBH0 407 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 LRRN4Q8WUT4 740 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 FATE1Q969F0 183 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 RTP4Q96DX8 246 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 LYSMD1Q96S90 227 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ASPSCR1Q9BZE9 553 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ADNPQ9H2P0 1102 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 PCDH9Q9HC56 1237 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 RBM22Q9NW64 420 aaKnown RBP eCLIP12.29□□□□□ -0.44
CPSF3-204ENST00000489403 TBC1D29Q9UFV1 150 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 AMACRQ9UHK6 382 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 ZNHIT2Q9UHR6 403 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 PILRAQ9UKJ1 303 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 KCNK6Q9Y257 313 aa12.29□□□□□ -0.44
CPSF3-204ENST00000489403 A0A087X0T9 212 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 C1orf232A0A0U1RR37 186 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 A0A1W2PQJ5 194 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 A6NCN8 305 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF891A8MT65 544 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 MYO1FO00160 1098 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 SERPINC1P01008 464 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 FAM228BP0C875 321 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 ACP5P13686 325 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 CA4P22748 312 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 CES1P23141 567 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 SPINT3P49223 89 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 MC2RQ01718 297 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 NFATC2Q13469 925 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 IQCB1Q15051 598 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 HADHQ16836 314 aaKnown RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 ANKRD20A8PQ5CZ79 823 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 IYDQ6PHW0 289 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 WDR74Q6RFH5 385 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 NCSTNQ92542 709 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 TSGA13Q96PP4 275 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 TEFMQ96QE5 360 aaKnown RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 CTRCQ99895 268 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF670Q9BS34 389 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 SPRY4Q9C004 299 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 STN1Q9H668 368 aaKnown RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 APMAPQ9HDC9 416 aa12.28□□□□□ -0.44
CPSF3-204ENST00000489403 SARS2Q9NP81 518 aaKnown RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 BZW2Q9Y6E2 419 aaKnown RBP12.28□□□□□ -0.44
CPSF3-204ENST00000489403 SPENQ96T58 3664 aaKnown RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 LOC101059948A0A1B0GTJ6 334 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 SERPING1P05155 500 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 MMP2P08253 660 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 PBX1P40424 430 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 RPL26P61254 145 aaKnown RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 GBE1Q04446 702 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 TLE1Q04724 770 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 KCNAB2Q13303 367 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 QPCTQ16769 361 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 TIPARPQ7Z3E1 657 aaKnown RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 SLC9B2Q86UD5 537 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 PTRH1Q86Y79 214 aaKnown RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 NLGN4XQ8N0W4 816 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 NLGN4YQ8NFZ3 816 aaPredicted RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF564Q8TBZ8 553 aaPredicted RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 SYN2Q92777 582 aaPredicted RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 FAF2Q96CS3 445 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 HDAC11Q96DB2 347 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 SLC45A3Q96JT2 553 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 HERPUD2Q9BSE4 406 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 FAM83DQ9H4H8 585 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 RMI1Q9H9A7 625 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 HAUS2Q9NVX0 235 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 PKD2L2Q9NZM6 624 aa12.27□□□□□ -0.45
CPSF3-204ENST00000489403 RPL26L1Q9UNX3 145 aaKnown RBP12.27□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF106Q9H2Y7 1883 aaKnown RBP12.26□□□□□ -0.45
CPSF3-204ENST00000489403 NKX2-8O15522 239 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 GRID2O43424 1007 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 NUAK1O60285 661 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 SNX2O60749 519 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 F3P13726 295 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 SLC2A4P14672 509 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 CD86P42081 329 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 MAPK9P45984 424 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 EPHA4P54764 986 aa12.26□□□□□ -0.45
CPSF3-204ENST00000489403 TAS2R40P59535 323 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms