RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 C16orf45Q96MC5 204 aaPredicted RBP8.77□□□□□ -1.01
USP4-213ENST00000488520 SLC46A1Q96NT5 459 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 OSBPL9Q96SU4 736 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 CINPQ9BW66 212 aaPredicted RBP8.77□□□□□ -1.01
USP4-213ENST00000488520 SYNDIG1Q9H7V2 258 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 DYRK4Q9NR20 520 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 DTLQ9NZJ0 730 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 SEPT3Q9UH03 358 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 VPS51Q9UID3 782 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 SNX12Q9UMY4 172 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 ZNF148Q9UQR1 794 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 ENTPD2Q9Y5L3 495 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 OR51B4Q9Y5P0 310 aa8.77□□□□□ -1.01
USP4-213ENST00000488520 BSNQ9UPA5 3926 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 A6NNZ2 444 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 J3KR12 359 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 K7ERQ8 282 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 PGRMC1O00264 195 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 ALOX15BO15296 676 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 RAD51BO15315 384 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 SMAD6O43541 496 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 PRAMEF11O60813 436 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 POP4O95707 220 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 IGSF6O95976 241 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 PAK4O96013 591 aaPredicted RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 SRCP12931 536 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CCNB1P14635 433 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CES1P23141 567 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 STIP1P31948 543 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 HSPA9P38646 679 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 GARSP41250 739 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 HNRNPKP61978 463 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP4-213ENST00000488520 NFKB2Q00653 900 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 OTUD4Q01804 1114 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 GBE1Q04446 702 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 GALNT2Q10471 571 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TUBB2AQ13885 445 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 FZD2Q14332 565 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TAZQ16635 292 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CARD16Q5EG05 197 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 PERM1Q5SV97 790 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CFAP58Q5T655 872 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 PAPD7Q5XG87 772 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 AFMIDQ63HM1 303 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 AADACL2Q6P093 401 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 ABI3BPQ7Z7G0 1075 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CDKL3Q8IVW4 592 aaPredicted RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 ARHGAP12Q8IWW6 846 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 PCDH20Q8N6Y1 951 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 NETO2Q8NC67 525 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 ZNF548Q8NEK5 533 aaPredicted RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 KIF18AQ8NI77 898 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 LMX1AQ8TE12 382 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 ISG20Q96AZ6 181 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 PRR11Q96HE9 360 aaPredicted RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 TSGA13Q96PP4 275 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TUBB2BQ9BVA1 445 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 DUSP23Q9BVJ7 150 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 CEP44Q9C0F1 390 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TNKS2Q9H2K2 1166 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 RBM22Q9NW64 420 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP4-213ENST00000488520 SAE1Q9UBE0 346 aaPredicted RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 ZNF212Q9UDV6 495 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TTLL3Q9Y4R7 772 aa8.76□□□□□ -1.01
USP4-213ENST00000488520 TLN1Q9Y490 2541 aaKnown RBP8.76□□□□□ -1.01
USP4-213ENST00000488520 FLNCQ14315 2725 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 AGRPO00253 132 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 KRIT1O00522 736 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 MUSKO15146 869 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 AQP9O43315 295 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 MFSD11O43934 449 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 MAFKO60675 156 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 RGS9O75916 674 aaPredicted RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 URI1O94763 535 aaPredicted RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 TNFSF15O95150 251 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 JCHAINP01591 159 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 RBP3P10745 1247 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 NFKBIAP25963 317 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 MMP13P45452 471 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 SERPINH1P50454 418 aaKnown RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 SCNN1BP51168 640 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 NSUN2Q08J23 767 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP4-213ENST00000488520 SLC10A2Q12908 348 aaPredicted RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 SRSF6Q13247 344 aaKnown RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 C1orf61Q13536 156 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 FGL2Q14314 439 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 PRPSAP1Q14558 356 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 GRM3Q14832 879 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 CCNG2Q16589 344 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 TPRG1LQ5T0D9 272 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 CCDC70Q6NSX1 233 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 ZCCHC8Q6NZY4 707 aaKnown RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 NEK5Q6P3R8 708 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 RBM44Q6ZP01 1051 aaKnown RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 ERN2Q76MJ5 926 aaKnown RBP8.75□□□□□ -1.01
USP4-213ENST00000488520 PID1Q7Z2X4 250 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 CD163Q86VB7 1156 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 NDUFAF2Q8N183 169 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 NPWQ8N729 165 aa8.75□□□□□ -1.01
USP4-213ENST00000488520 EXD3Q8N9H8 876 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms