RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 C6orf141Q5SZD1 244 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 PDSS1Q5T2R2 415 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 NAA35Q5VZE5 725 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 C18orf63Q68DL7 685 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 DGLUCYQ7Z3D6 616 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 MYRIPQ8NFW9 859 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 TAF15Q92804 592 aaKnown RBP eCLIP3.08□□□□□ -1.92
VPS50-216ENST00000484954 GTF3C6Q969F1 213 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 WBP2Q969T9 261 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 ST6GAL2Q96JF0 529 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 QRFPRQ96P65 431 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 TMEM47Q9BQJ4 181 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 PCGF1Q9BSM1 259 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 PAIP1Q9H074 479 aaKnown RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 SCPEP1Q9HB40 452 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 KDM3AQ9Y4C1 1321 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 ZCWPW2A0A1B0GU75 182 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 C1orf226A1L170 272 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 FAM90A26D6RGX4 464 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 NKX2-2O95096 273 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 IGHV4-39P01824 125 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 SERPINB2P05120 415 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 PRSS1P07477 247 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 PATE4P0C8F1 98 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 FAM106CPP0CH98 169 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 POLR2CP19387 275 aaPredicted RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 AMPHP49418 695 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 DECR1Q16698 335 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 GSTA3Q16772 222 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 ARHGAP11AQ6P4F7 1023 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 ADSSL1Q8N142 457 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 RBM15BQ8NDT2 890 aaKnown RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 NFKBIDQ8NI38 313 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 CTCFLQ8NI51 663 aaPredicted RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 FAM76AQ8TAV0 307 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 GRAPLQ8TC17 118 aaPredicted RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 TAS1R2Q8TE23 839 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 TAAR8Q969N4 342 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 RRP36Q96EU6 259 aaKnown RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 ZNF354BQ96LW1 612 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 DUX3Q96PT4 197 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 F2RL3Q96RI0 385 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 PIP5K1AQ99755 562 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 EIF2AK1Q9BQI3 630 aaKnown RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 LTB4R2Q9NPC1 389 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 ASAH2Q9NR71 780 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 CNOT8Q9UFF9 292 aaKnown RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 HAO1Q9UJM8 370 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 FBXL2Q9UKC9 423 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 GJD2Q9UKL4 321 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 ARHGAP26Q9UNA1 814 aa3.07□□□□□ -1.92
VPS50-216ENST00000484954 LRRFIP2Q9Y608 721 aaKnown RBP3.07□□□□□ -1.92
VPS50-216ENST00000484954 A0A1W2PP11 408 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 EIF3DO15371 548 aaKnown RBP eCLIP3.06□□□□□ -1.92
VPS50-216ENST00000484954 WISP2O76076 250 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 PAX1P15863 534 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 GM2AP17900 193 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 ALDH4A1P30038 563 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 FASLGP48023 281 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 PPM1FP49593 454 aaPredicted RBP3.06□□□□□ -1.92
VPS50-216ENST00000484954 FCN2Q15485 313 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 TMEM35AQ53FP2 167 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 TTI2Q6NXR4 508 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 TSSK4Q6SA08 328 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 CEACAM20Q6UY09 585 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 ANO5Q75V66 913 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 GPR180Q86V85 440 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 ZNF354CQ86Y25 554 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 MAP7D3Q8IWC1 876 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 WDSUB1Q8N9V3 476 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 OR10V1Q8NGI7 309 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 ZUFSPQ96AP4 578 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 RRNAD1Q96FB5 475 aaKnown RBP3.06□□□□□ -1.92
VPS50-216ENST00000484954 SMC6Q96SB8 1091 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 WASH6PQ9NQA3 447 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 KLHL9Q9P2J3 617 aa3.06□□□□□ -1.92
VPS50-216ENST00000484954 IGLV5-45A0A087WSX0 123 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 A0A1W2PQF6 199 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 NPIPB15A6NHN6 443 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 TMEM178BH3BS89 294 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 M0QZ24 198 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 ANKRD28O15084 1053 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CTSVO60911 334 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 TUBBP07437 444 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 ZNF883P0CG24 379 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 ZNF182P17025 639 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 RGS2P41220 211 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 UBA7P41226 1012 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 ARCN1P48444 511 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 HOXA1P49639 335 aaPredicted RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 F2RL1P55085 397 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 EIF3BP55884 814 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 EEF1A1P68104 462 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 TUBB4BP68371 445 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CEBPZQ03701 1054 aaKnown RBP3.05□□□□□ -1.92
VPS50-216ENST00000484954 GRIK2Q13002 908 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 CDC16Q13042 620 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 TMEM30BQ3MIR4 351 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 ZNF876PQ49A33 203 aa3.05□□□□□ -1.92
VPS50-216ENST00000484954 KRTCAP3Q53RY4 240 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms