RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 STAT4Q14765 748 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 BRD3Q15059 726 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ATP13A5Q4VNC0 1218 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 FASTKD1Q53R41 847 aaKnown RBP12.16□□□□□ -0.46
SDC1-206ENST00000482879 WDR45BQ5MNZ6 344 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 PMS2CLQ68D20 193 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 PDPK2PQ6A1A2 396 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 NEPROQ6NW34 567 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 TRMT10BQ6PF06 316 aaKnown RBP12.16□□□□□ -0.46
SDC1-206ENST00000482879 TAS2R42Q7RTR8 314 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 SNX20Q7Z614 316 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 KCNMB4Q86W47 210 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 OTUD6BQ8N6M0 293 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.16□□□□□ -0.467e-6■■■■■ 27.5
SDC1-206ENST00000482879 CERS2Q96G23 380 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 SGSM3Q96HU1 749 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 PRRX2Q99811 253 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 ORAI3Q9BRQ5 295 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 MIR1-1HGQ9H1L0 117 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 CATSPERZQ9NTU4 200 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 MOCS1Q9NZB8 636 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 CRLS1Q9UJA2 301 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 RALGAPA1Q6GYQ0 2036 aa12.16□□□□□ -0.46
SDC1-206ENST00000482879 POM121BA6NF01 834 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 INPP4BO15327 924 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 CD3EAPO15446 510 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 GPR39O43194 453 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 SOD1P00441 154 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 PRSS56P0CW18 603 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 TEAD1P28347 426 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 CA5AP35218 305 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 PHBP35232 272 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 CDKN1CP49918 316 aaPredicted RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 MGAT5Q09328 741 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 GPR33Q49SQ1 333 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 HSP90AA5PQ58FG0 334 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 UBAP2Q5T6F2 1119 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 LYSMD4Q5XG99 296 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 PSAPL1Q6NUJ1 521 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 ADAMTSL4Q6UY14 1074 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 KDM7AQ6ZMT4 941 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 PRR23BQ6ZRT6 265 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 TMEM145Q8NBT3 493 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 GABPB2Q8TAK5 448 aaPredicted RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 UHMK1Q8TAS1 419 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 CALML6Q8TD86 181 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 FBF1Q8TES7 1133 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 BTN2A2Q8WVV5 523 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 UBLCP1Q8WVY7 318 aaPredicted RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 DNASE2BQ8WZ79 361 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 CAVIN3Q969G5 261 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 ULK4Q96C45 1275 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 ZC3H10Q96K80 434 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 BMFQ96LC9 184 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 SLC6A18Q96N87 628 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 APOOQ9BUR5 198 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 AASDHPPTQ9NRN7 309 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 IARS2Q9NSE4 1012 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 CNOT6Q9ULM6 557 aaKnown RBP12.15□□□□□ -0.46
SDC1-206ENST00000482879 R4GN57 208 aa12.15□□□□□ -0.46
SDC1-206ENST00000482879 CACNA1EQ15878 2313 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TRBV5-4A0A0C4DH59 114 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TCRBV9S1A1TA0A576 114 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 CCDC151A5D8V7 595 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 H0Y8X5 98 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 RIPK2O43353 540 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 SLC25A14O95258 325 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 ITPKAP23677 461 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 PMLP29590 882 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 STX2P32856 288 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TRIM23P36406 574 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 PPARGP37231 505 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 SEMA3AQ14563 771 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 AARS2Q5JTZ9 985 aaKnown RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 LYPLAL1Q5VWZ2 237 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 MRNIPQ6NTE8 343 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 ZC3H14Q6PJT7 736 aaKnown RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 GCNT7Q6ZNI0 430 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 CYS1Q717R9 158 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 SDCCAG8Q86SQ7 713 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 LDB1Q86U70 411 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 SERPINA9Q86WD7 417 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 HEATR4Q86WZ0 1026 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 PIANPQ8IYJ0 282 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 GPR150Q8NGU9 434 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 GDAP1Q8TB36 358 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 GLYATL1Q969I3 302 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 HIC2Q96JB3 615 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 VPS35Q96QK1 796 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TTC1Q99614 292 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 FAM167BQ9BTA0 163 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TEX101Q9BY14 249 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 WDR26Q9H7D7 661 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 PHPT1Q9NRX4 125 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 MARCH4Q9P2E8 410 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 TMPRSS11EQ9UL52 423 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 OR1A2Q9Y585 309 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 SLCO1B1Q9Y6L6 691 aa12.14□□□□□ -0.47
SDC1-206ENST00000482879 TP53BP1Q12888 1972 aaPredicted RBP12.14□□□□□ -0.47
SDC1-206ENST00000482879 A0A087WUV0 522 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms