RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 GPR89BP0CG08 455 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 COL6A2P12110 1019 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 CRABP2P29373 138 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SKIV2L2P42285 1042 aaKnown RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 NSG1P42857 185 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SLCO1A2P46721 670 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SERPINB8P50452 374 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 TPMTP51580 245 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SLC12A2P55011 1212 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 TAS2R38P59533 333 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SGCGQ13326 291 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 EFTUD2Q15029 972 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP39-215ENST00000481409 TMED2Q15363 201 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 POM121L1PQ3SYA9 428 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 TMEM259Q4ZIN3 620 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SETMARQ53H47 684 aaPredicted RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 KIAA1324Q6UXG2 1013 aaKnown RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 FAM151BQ6UXP7 276 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 Q6ZS52 159 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 Q6ZVL8 140 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 HSD11B1LQ7Z5J1 315 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 TRABD2AQ86V40 505 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 HORMAD1Q86X24 394 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 UNC5BQ8IZJ1 945 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 NXPE1Q8N323 547 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 DDHD1Q8NEL9 900 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 OR14C36Q8NHC7 312 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 AP2M1Q96CW1 435 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SMC6Q96SB8 1091 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 COPS8Q99627 209 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 TSSK1BQ9BXA7 367 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SPATA16Q9BXB7 569 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 EPHX3Q9H6B9 360 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SUDS3Q9H7L9 328 aaPredicted RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 MKS1Q9NXB0 559 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 ZDHHC3Q9NYG2 299 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 BCCIPQ9P287 314 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP39-215ENST00000481409 KLHL42Q9P2K6 505 aa10.1□□□□□ -0.79
USP39-215ENST00000481409 SMG5Q9UPR3 1016 aaKnown RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 MTF2Q9Y483 593 aaPredicted RBP10.1□□□□□ -0.79
USP39-215ENST00000481409 KLHL33A6NCF5 533 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 ANTXRLA6NF34 631 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 A6NNZ2 444 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 A8MX80 341 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 C10orf142B7Z368 130 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PRMT5O14744 637 aaPredicted RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 MMP20O60882 483 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 RNGTTO60942 597 aaKnown RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 GSTA1P08263 222 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 HOXC4P09017 264 aaPredicted RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 STMN1P16949 149 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 AOC1P19801 751 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 ETV3P41162 512 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 MAGEA12P43365 314 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CXCL12P48061 93 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CCR5P51681 352 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 METAP1P53582 386 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CTBP1Q13363 440 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PTPRCAPQ14761 206 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CHRNA6Q15825 494 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 INSCQ1MX18 579 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 TUBB8Q3ZCM7 444 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 ADAMTSL4Q6UY14 1074 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 TAS2R42Q7RTR8 314 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 SERPINA9Q86WD7 417 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PHYKPLQ8IUZ5 450 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 DENND6AQ8IWF6 608 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP39-215ENST00000481409 PGBD3Q8N328 593 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 MZB1Q8WU39 189 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 BTN2A2Q8WVV5 523 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 HMGB4Q8WW32 186 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 LPGAT1Q92604 370 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 KCNJ9Q92806 393 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 ZNF514Q96K75 400 aaPredicted RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 SMIM14Q96QK8 99 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PANX3Q96QZ0 392 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 WRAP53Q9BUR4 548 aaKnown RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 FOXQ1Q9C009 403 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CLPBQ9H078 707 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 ABCG8Q9H221 673 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CENPHQ9H3R5 247 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 CNOT10Q9H9A5 744 aaKnown RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 TAS2R13Q9NYV9 303 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 TBK1Q9UHD2 729 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 GNPTGQ9UJJ9 305 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 NOVA2Q9UNW9 492 aaKnown RBP10.09□□□□□ -0.79
USP39-215ENST00000481409 ANKRD6Q9Y2G4 727 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 VWA7Q9Y334 891 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 PSAT1Q9Y617 370 aa10.09□□□□□ -0.79
USP39-215ENST00000481409 TBC1D3DA0A087WVF3 549 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 TBC1D3IA0A087WXS9 549 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 TBC1D3EA0A087X179 549 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 A0A087X1B8 175 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 TBC1D3KA0A087X1G2 549 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 FAM95CA0A1B0GW59 222 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 TBC1D3FA6NER0 549 aaPredicted RBP10.08□□□□□ -0.8
USP39-215ENST00000481409 SMIM23A6NLE4 172 aa10.08□□□□□ -0.8
USP39-215ENST00000481409 TBC1D3LB9A6J9 549 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms