RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 RHOT1Q8IXI2 618 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 SFRP1Q8N474 314 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 SH3KBP1Q96B97 665 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 IMP4Q96G21 291 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 ZSCAN5AQ9BUG6 496 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 RIOK2Q9BVS4 552 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 SLC25A51Q9H1U9 297 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 CARD9Q9H257 536 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 EPB41L1Q9H4G0 881 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 NHEJ1Q9H9Q4 299 aaPredicted RBP12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 ZFYVE1Q9HBF4 777 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 MAGEE1Q9HCI5 957 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 SARS2Q9NP81 518 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 PCDHB11Q9Y5F2 797 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 PCDHGA3Q9Y5H0 932 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 HEY1Q9Y5J3 304 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 ST14Q9Y5Y6 855 aa12.04□□□□□ -0.48
SQSTM1-207ENST00000481335 IGHV1OR21-1A0A087WYE8 117 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 KIR2DS5A0A0G2JLQ3 304 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 A0A0G2JNG1 304 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 IGHV5-10-1A0A0J9YXX1 117 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 KIR2DS3K7RE56 304 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 MTSS1O43312 755 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PSTPIP1O43586 416 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 DUX1O43812 170 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 ASMTLO95671 621 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 THRAP10827 490 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 HGFP14210 728 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 CD1CP29017 333 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 EPHA4P54764 986 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 OR1D5P58170 312 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 AP1B1Q10567 949 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 ZBTB17Q13105 803 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TFDP2Q14188 446 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 KIR2DS5Q14953 304 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PTPRRQ15256 657 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 AMZ1Q400G9 498 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TMEM71Q6P5X7 295 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TMPRSS9Q7Z410 1059 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 DTX1Q86Y01 620 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 CPNE8Q86YQ8 564 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 ZNF843Q8N446 348 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 CNTD1Q8N815 330 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 AGBL5Q8NDL9 886 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 OR10G6Q8NH81 332 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 SLC37A2Q8TED4 501 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PTCD2Q8WV60 388 aaKnown RBP12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TADA1Q96BN2 335 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TRIB3Q96RU7 358 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 WDR24Q96S15 920 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 AGAP2Q99490 1192 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 NUDT22Q9BRQ3 303 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 DDA1Q9BW61 102 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 SEMA6CQ9H3T2 930 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TSPY26PQ9H489 355 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 SUDS3Q9H7L9 328 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 RDH14Q9HBH5 336 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 KCNK4Q9NYG8 393 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PDP2Q9P2J9 529 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 TMEM98Q9Y2Y6 226 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PIEZO2Q9H5I5 2752 aa12.03□□□□□ -0.48
SQSTM1-207ENST00000481335 PRAMEF33A0A0G2JMD5 474 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 STMND1H3BQB6 276 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 PPM1DO15297 605 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 INPP4BO15327 924 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 NUAK1O60285 661 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 PRAMEF10O60809 474 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 KRT1P04264 644 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 ITGB2P05107 769 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 ITIH1P19827 911 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 RAB15P59190 212 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 HHEXQ03014 270 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 C16orf72Q14CZ0 275 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 TEX44Q53QW1 395 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 ZNF569Q5MCW4 686 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 WDR74Q6RFH5 385 aaPredicted RBP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 RFLNAQ6ZTI6 216 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 SLC9B2Q86UD5 537 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 TRIM74Q86UV6 250 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 PHYKPLQ8IUZ5 450 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 TRAM1L1Q8N609 369 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 DTX3LQ8TDB6 740 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 PATE1Q8WXA2 126 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 SGF29Q96ES7 293 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 AHCYL2Q96HN2 611 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 CCDC74BQ96LY2 380 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 TEFMQ96QE5 360 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 TAAR9Q96RI9 348 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 VAT1Q99536 393 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 SLC38A3Q99624 504 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 CHP1Q99653 195 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 ASPSCR1Q9BZE9 553 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 SPTLC3Q9NUV7 552 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 CNOT6Q9ULM6 557 aaKnown RBP12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 SPTA1P02549 2419 aa12.02□□□□□ -0.49
SQSTM1-207ENST00000481335 A0A0A6YYK5 440 aaPredicted RBP12.01□□□□□ -0.49
SQSTM1-207ENST00000481335 A0A0U1RQS6 177 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms