RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	CASQ1	P31415	396 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	SPAM1	P38567	509 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	ETF1	P62495	437 aa	Known RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	SIM1	P81133	766 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	TMPRSS15	P98073	1019 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	GPS1	Q13098	491 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	MSLN	Q13421	630 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	TAF1A	Q15573	450 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	DEFB133	Q30KQ1	61 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	INAVA	Q3KP66	663 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	ZNF648	Q5T619	568 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	RAVER1	Q8IY67	606 aa	Known RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	TRAM1L1	Q8N609	369 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	DNAAF3	Q8N9W5	541 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	OR4K2	Q8NGD2	314 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	OR13C4	Q8NGS5	318 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	BTN2A2	Q8WVV5	523 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	HIC2	Q96JB3	615 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	C16orf45	Q96MC5	204 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	TRPM6	Q9BX84	2022 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	FRMD8	Q9BZ67	464 aa	Predicted RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	CLPB	Q9H078	707 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	DDX47	Q9H0S4	455 aa	Known RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	ARNT2	Q9HBZ2	717 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	IL26	Q9NPH9	171 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	RAD18	Q9NS91	495 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	SPAST	Q9UBP0	616 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	FTSJ1	Q9UET6	329 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	FKBPL	Q9UIM3	349 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	CNOT6	Q9ULM6	557 aa	Known RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	PKP3	Q9Y446	797 aa		10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	OAS3	Q9Y6K5	1087 aa	Known RBP	10.2	□□□□□ -0.78
HDAC6-222	ENST00000478095	CACNA1E	Q15878	2313 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ADAMTS9	Q9P2N4	1935 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	DCHS1	Q96JQ0	3298 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	GLYATL1P3	A0A0U1RQE8	302 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	TCRBV7S3A2	A0A539	114 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ERI2	A8K979	691 aa	Known RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	GAPDHS	O14556	408 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	SIGLEC6	O43699	453 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A9	O60656	530 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	SUN1	O94901	812 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ECEL1	O95672	775 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CRTAM	O95727	393 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	TNF	P01375	233 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	PYGL	P06737	847 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	GIMD1	P0DJR0	217 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CEACAM1	P13688	526 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CTSE	P14091	401 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A6	P19224	532 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	LPO	P22079	712 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A1	P22309	533 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A4	P22310	534 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CA5A	P35218	305 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A3	P35503	534 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A5	P35504	534 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	GNPDA1	P46926	289 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	FNTA	P49354	379 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	BLK	P51451	505 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ZNF140	P52738	457 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CDH17	Q12864	832 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	TRIP6	Q15654	476 aa	Known RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CHRNA6	Q15825	494 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ATP13A5	Q4VNC0	1218 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CCDC38	Q502W7	563 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CCDC157	Q569K6	752 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CERCAM	Q5T4B2	595 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	LINC00523	Q86TU6	105 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	NLRP8	Q86W28	1048 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	KLHL7	Q8IXQ5	586 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CCL4L1	Q8NHW4	92 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	BAHD1	Q8TBE0	780 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	BRSK1	Q8TDC3	778 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	TRIM44	Q96DX7	344 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	COX14	Q96I36	57 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	DNAJC1	Q96KC8	554 aa	Known RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CNDP2	Q96KP4	475 aa	Known RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	PLEKHG4B	Q96PX9	1271 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ZSCAN5A	Q9BUG6	496 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	TMEM168	Q9H0V1	697 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	CDH19	Q9H159	772 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A7	Q9HAW7	530 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A10	Q9HAW8	530 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	UGT1A8	Q9HAW9	530 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	FEZ2	Q9UHY8	353 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	SUFU	Q9UMX1	484 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	PRKAB1	Q9Y478	270 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	DGKB	Q9Y6T7	804 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	RALGAPA1	Q6GYQ0	2036 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	ANKRD36	A6QL64	1941 aa		10.19	□□□□□ -0.78
HDAC6-222	ENST00000478095	DOCK9	Q9BZ29	2069 aa		10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	NEMP2	A6NFY4	417 aa		10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	TNFRSF10C	O14798	259 aa		10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	LDB2	O43679	373 aa		10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	SLC25A14	O95258	325 aa	Predicted RBP	10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	PRAMEF1	O95521	474 aa		10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	LDOC1	O95751	146 aa	Predicted RBP	10.18	□□□□□ -0.78
HDAC6-222	ENST00000478095	GAS8	O95995	478 aa		10.18	□□□□□ -0.78

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