RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 KIF5AQ12840 1032 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 DOK6Q6PKX4 331 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 NAGSQ8N159 534 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 ACTL9Q8TC94 416 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 ALG3Q92685 438 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 ATXN7L3BQ96GX2 97 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 PRR11Q96HE9 360 aaPredicted RBP21.58■■□□□ 1.05
COL9A3-211ENST00000477612 OXNAD1Q96HP4 312 aaPredicted RBP21.58■■□□□ 1.05
COL9A3-211ENST00000477612 GFM1Q96RP9 751 aaKnown RBP21.58■■□□□ 1.05
COL9A3-211ENST00000477612 ZSCAN5AQ9BUG6 496 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 UBP1Q9NZI7 540 aa21.58■■□□□ 1.05
COL9A3-211ENST00000477612 D6RAR5 112 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 TMX2-CTNND1H3BSU7 103 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 RPLP0P05388 317 aaKnown RBP21.57■■□□□ 1.04
COL9A3-211ENST00000477612 PIRTP0C851 137 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 PYGMP11217 842 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 RBL1P28749 1068 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 HMGCLP35914 325 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 CETN2P41208 172 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 ERVPABLB-1P60509 514 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 B4GALNT1Q00973 533 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 OTUD4Q01804 1114 aaKnown RBP21.57■■□□□ 1.04
COL9A3-211ENST00000477612 MPP3Q13368 585 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 SPRED1Q7Z699 444 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 GALNT13Q8IUC8 556 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 CCNJLQ8IV13 435 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 SYCE1Q8N0S2 351 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 ARL14Q8N4G2 192 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 TRAM1L1Q8N609 369 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 DTX3LQ8TDB6 740 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 LIN37Q96GY3 246 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-211ENST00000477612 GPR63Q9BZJ6 419 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 CARD9Q9H257 536 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 TRABDQ9H4I3 376 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 SUDS3Q9H7L9 328 aaPredicted RBP21.57■■□□□ 1.04
COL9A3-211ENST00000477612 ASCL3Q9NQ33 180 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 AMFRQ9UKV5 643 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 PLEKHM1Q9Y4G2 1056 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 SPO11Q9Y5K1 396 aa21.57■■□□□ 1.04
COL9A3-211ENST00000477612 AURKAO14965 403 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 NUAK1O60285 661 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ASMTLO95671 621 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ECEL1O95672 775 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ATP1A1P05023 1023 aaKnown RBP21.56■■□□□ 1.04
COL9A3-211ENST00000477612 BPIP17213 487 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 CCKBRP32239 447 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ACTR1BP42025 376 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 MLLT3P42568 568 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ACTR1AP61163 376 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 SLC30A9Q6PML9 568 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 SPC24Q8NBT2 197 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 WDR36Q8NI36 951 aaKnown RBP21.56■■□□□ 1.04
COL9A3-211ENST00000477612 SLC46A1Q96NT5 459 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 PLEKHG4BQ96PX9 1271 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 LHX6Q9UPM6 363 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 SATB2Q9UPW6 733 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 PCYT1BQ9Y5K3 369 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ADGRG1Q9Y653 693 aa21.56■■□□□ 1.04
COL9A3-211ENST00000477612 ZNF106Q9H2Y7 1883 aaKnown RBP21.56■■□□□ 1.04
COL9A3-211ENST00000477612 CCDC187A0A096LP49 1063 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 A0A0U1RQJ8 604 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 MIF4GDA9UHW6 222 aaKnown RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 GPR89AB7ZAQ6 455 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 H7C0C1 242 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 B4GAT1O43505 415 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 TJP3O95049 919 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 GPR89BP0CG08 455 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 HLA-DPA1P20036 260 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 ATP5OP48047 213 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 MAZP56270 477 aaKnown RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 ZFP36L1Q07352 338 aaKnown RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 SLC1A5Q15758 541 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 CLPPQ16740 277 aaPredicted RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 SIRPB2Q5JXA9 342 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 MARK2Q7KZI7 788 aaKnown RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 PEX26Q7Z412 305 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 HNRNPLLQ8WVV9 542 aaKnown RBP21.55■■□□□ 1.04
COL9A3-211ENST00000477612 TMEM74Q96NL1 305 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 SPATA16Q9BXB7 569 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 GBA3Q9H227 469 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 TRIM39Q9HCM9 518 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 HACD3Q9P035 362 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 TRIM10Q9UDY6 481 aa21.55■■□□□ 1.04
COL9A3-211ENST00000477612 ZNF189O75820 626 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-211ENST00000477612 RBP3P10745 1247 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 GPR3P46089 330 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 EIF3IQ13347 325 aaKnown RBP21.54■■□□□ 1.04
COL9A3-211ENST00000477612 COL28A1Q2UY09 1125 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 C3orf38Q5JPI3 329 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 ZNF569Q5MCW4 686 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 CCDC181Q5TID7 509 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 AADACL2Q6P093 401 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 C19orf48Q6RUI8 117 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 B3GNT8Q7Z7M8 397 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 CDKL3Q8IVW4 592 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-211ENST00000477612 TTC30BQ8N4P2 665 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 RNF10Q8N5U6 811 aaKnown RBP21.54■■□□□ 1.04
COL9A3-211ENST00000477612 UBE2Q2Q8WVN8 375 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 PATE1Q8WXA2 126 aa21.54■■□□□ 1.04
COL9A3-211ENST00000477612 GLYATL1Q969I3 302 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms