RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NT5DC3Q86UY8 548 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 GPR26Q8NDV2 337 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 KCNE4Q8WWG9 221 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 TEKT5Q96M29 485 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 MAK16Q9BXY0 300 aaKnown RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 FAM83DQ9H4H8 585 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 HAUS2Q9NVX0 235 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ADGRG1Q9Y653 693 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 GCN1Q92616 2671 aaKnown RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 hCG_1818297A0A087WSY0 165 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 AGRPO00253 132 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CSF2RBP32927 897 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 MLLT3P42568 568 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CXADRP78310 365 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 C16orf72Q14CZ0 275 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 NOMO1Q15155 1222 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 SLC14A2Q15849 920 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 PCSK7Q16549 785 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF648Q5T619 568 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-204ENST00000475218 KDELC1Q6UW63 502 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 KATNAL2Q8IYT4 538 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 FBXO39Q8N4B4 442 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 TMEM74Q96NL1 305 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 CDH19Q9H159 772 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 ARFGAP3Q9NP61 516 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 UBP1Q9NZI7 540 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 VPS18Q9P253 973 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 TMPRSS11EQ9UL52 423 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 SHOC2Q9UQ13 582 aa13.99□□□□□ -0.17
UPF3A-204ENST00000475218 AHCTF1Q8WYP5 2266 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 A6NCN8 305 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 EFSO43281 561 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 C1QL1O75973 258 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 SLC5A2P31639 672 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 NR2C2P49116 596 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF75DP51815 510 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 CDK18Q07002 472 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 NKAIN2Q5VXU1 208 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 KAZNQ674X7 775 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 USP53Q70EK8 1073 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 GPR155Q7Z3F1 870 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 GALNT13Q8IUC8 556 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 SFRP1Q8N474 314 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 SLC37A2Q8TED4 501 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 UBL7Q96S82 380 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-204ENST00000475218 ADGRE3Q9BY15 652 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 DPH1Q9BZG8 443 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 ZFYVE1Q9HBF4 777 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 MAGEE1Q9HCI5 957 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 ATXN10Q9UBB4 475 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 NFKBIL1Q9UBC1 381 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-204ENST00000475218 TBC1D29Q9UFV1 150 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF711Q9Y462 761 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 LOXL2Q9Y4K0 774 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 PCDHGA7Q9Y5G6 932 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 DUSP10Q9Y6W6 482 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 BOD1L1Q8NFC6 3051 aa13.98□□□□□ -0.17
UPF3A-204ENST00000475218 A0A0A6YYK5 440 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 RGSL1A5PLK6 1076 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 SOWAHDA6NJG2 315 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 PMPCBO75439 489 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 PRB1P04280 392 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 PYGLP06737 847 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 ALDH4A1P30038 563 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 ARSDP51689 593 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 SRSF6Q13247 344 aaKnown RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 EIF3IQ13347 325 aaKnown RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 AMZ1Q400G9 498 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 KHDC1Q4VXA5 237 aaKnown RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 TFDP3Q5H9I0 405 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 ALS2CLQ60I27 953 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 C11orf63Q6NUN7 778 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 GAS2L3Q86XJ1 694 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 CCDC170Q8IYT3 715 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 SNRNP27Q8WVK2 155 aaKnown RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 HAUS1Q96CS2 278 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 OXNAD1Q96HP4 312 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-204ENST00000475218 GORASP1Q9BQQ3 440 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 STRADBQ9C0K7 418 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 PKD2L2Q9NZM6 624 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 TMEM9Q9P0T7 183 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 ACSL6Q9UKU0 697 aa13.97□□□□□ -0.17
UPF3A-204ENST00000475218 TRBV23OR9-2A0A075B6M9 112 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 IGHV1OR21-1A0A087WYE8 117 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 IGHV5-10-1A0A0J9YXX1 117 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 LOC285095A0A1B0GVY8 99 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 RHPN2P1A8MT19 583 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 C9orf172C9J069 976 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 TMX2-CTNND1H3BSU7 103 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 ATXN7O15265 892 aaPredicted RBP13.96□□□□□ -0.17
UPF3A-204ENST00000475218 ASMTLO95671 621 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 CPNE6O95741 557 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 NDST3O95803 873 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 ZNF8P17098 575 aaPredicted RBP13.96□□□□□ -0.17
UPF3A-204ENST00000475218 BPIP17213 487 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 NFKB1P19838 968 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 CHRNA4P43681 627 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 GPR3P46089 330 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 FASLGP48023 281 aa13.96□□□□□ -0.17
UPF3A-204ENST00000475218 DCDC1P59894 354 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms