RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SCARF2Q96GP6 870 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 COX14Q96I36 57 aa15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 WDR24Q96S15 920 aa15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 BRD8Q9H0E9 1235 aa15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 WDR70Q9NW82 654 aa15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 SAE1Q9UBE0 346 aaPredicted RBP15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 OAS3Q9Y6K5 1087 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-205ENST00000472524 FADS2P1A8MWK0 482 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 CST8O60676 142 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 ITGA2BP08514 1039 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PECAM1P16284 738 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 ALDH4A1P30038 563 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 CCKBRP32239 447 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 UGT1A5P35504 534 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 B4GALNT1Q00973 533 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 EIF3IQ13347 325 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PEX6Q13608 980 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PYCR3Q53H96 274 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PHF19Q5T6S3 580 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 HENMT1Q5T8I9 393 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 ALS2CLQ60I27 953 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 SPOCD1Q6ZMY3 1216 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 TMPRSS9Q7Z410 1059 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 C17orf82Q86X59 251 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 NAGSQ8N159 534 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 SPATA22Q8NHS9 363 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 TRIB3Q96RU7 358 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 SLC25A51Q9H1U9 297 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 FAM83DQ9H4H8 585 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 RDH14Q9HBH5 336 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PISDQ9UG56 409 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 ZNHIT2Q9UHR6 403 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 SHOC2Q9UQ13 582 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PRKAB1Q9Y478 270 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 LOXL2Q9Y4K0 774 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 PCYT1BQ9Y5K3 369 aaPredicted RBP15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 ALG6Q9Y672 507 aa15.6■□□□□ 0.09
CCDC88B-205ENST00000472524 A0A0A6YYK5 440 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 PYCARD-AS1I3L0S3 204 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 EFSO43281 561 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 B4GAT1O43505 415 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 MT-CYBP00156 380 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 JMJD7P0C870 316 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 PTPN3P26045 913 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 MLLT3P42568 568 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 MARCKSL1P49006 195 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 HADHBP55084 474 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 TFDP2Q14188 446 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 SPA17Q15506 151 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 TEX44Q53QW1 395 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 CCDC81Q6ZN84 652 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 BZW1Q7L1Q6 419 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 ZNF438Q7Z4V0 828 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 CCDC50Q8IVM0 306 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 RAVER1Q8IY67 606 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 TFB1MQ8WVM0 346 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 HAUS1Q96CS2 278 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 SPATA16Q9BXB7 569 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 SEMA6CQ9H3T2 930 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 ZFYVE1Q9HBF4 777 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 GLOD4Q9HC38 313 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 UBP1Q9NZI7 540 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 CNOT6Q9ULM6 557 aaKnown RBP15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 ZNF711Q9Y462 761 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 PCDHA13Q9Y5I0 950 aa15.59■□□□□ 0.09
CCDC88B-205ENST00000472524 TRBV23OR9-2A0A075B6M9 112 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 F5H423 210 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 DNAJC6O75061 913 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 PMPCBO75439 489 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 LCA5LO95447 670 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 CPNE6O95741 557 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ITIH1P19827 911 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 CYLC1P35663 651 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 NR2C2P49116 596 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 PPM1FP49593 454 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 CDK18Q07002 472 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ZFP36L1Q07352 338 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ADCY2Q08462 1091 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 PRKD1Q15139 912 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 TAZQ16635 292 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ZNF569Q5MCW4 686 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 USP53Q70EK8 1073 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 CHST15Q7LFX5 561 aaPredicted RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 PIM3Q86V86 326 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ZC3H18Q86VM9 953 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 SLITRK4Q8IW52 837 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 CCDC170Q8IYT3 715 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 EID2BQ96D98 161 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 NUDT22Q9BRQ3 303 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 GPR63Q9BZJ6 419 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ZMYND15Q9H091 742 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 ARFGAP3Q9NP61 516 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 VPS18Q9P253 973 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 SDK2Q58EX2 2172 aa15.58■□□□□ 0.08
CCDC88B-205ENST00000472524 hCG_1818297A0A087WSY0 165 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 RGSL1A5PLK6 1076 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 B8ZZF3 427 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 PPM1DO15297 605 aa15.57■□□□□ 0.08
CCDC88B-205ENST00000472524 ZW10O43264 779 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms