RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ARHGAP12Q8IWW6 846 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 LZTR1Q8N653 840 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TWIST2Q8WVJ9 160 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PTERQ96BW5 349 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CCDC138Q96M89 665 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CDK15Q96Q40 435 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 GLOD4Q9HC38 313 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 RGS18Q9NS28 235 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PKD2L2Q9NZM6 624 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 VWA7Q9Y334 891 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TCAF1Q9Y4C2 921 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 COMMD10Q9Y6G5 202 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 SQORQ9Y6N5 450 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 DOCK4Q8N1I0 1966 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 VWA8A3KMH1 1905 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 A0A0U1RQF3 1178 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 A0A0U1RQS6 177 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 GOLGA8CPA6NN73 597 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 ENPP3O14638 875 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 BCL10O95999 233 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 ALBP02768 609 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PAMP19021 973 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PCSK1P29120 753 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PGFP49763 221 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 CAP1Q01518 475 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 NRG1Q02297 640 aaPredicted RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 RELAQ04206 551 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 GNASQ5JWF2 1037 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 AFMIDQ63HM1 303 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 DCLRE1AQ6PJP8 1040 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 Q6ZNX1 250 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PRR23BQ6ZRT6 265 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 KLHDC9Q8NEP7 349 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TBC1D15Q8TC07 691 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TBATAQ96M53 351 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 TMEM209Q96SK2 561 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 MRPL40Q9NQ50 206 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 POLE4Q9NR33 117 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 INTS7Q9NVH2 962 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 PADI3Q9ULW8 664 aa12.38□□□□□ -0.43
HDAC4-208ENST00000463007 AAR2Q9Y312 384 aaKnown RBP12.38□□□□□ -0.43
HDAC4-208ENST00000463007 NPHS1O60500 1241 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 HMBSP08397 361 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 SLC6A2P23975 617 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 RPS9P46781 194 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 PRKAA2P54646 552 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 MTPNP58546 118 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 LIPEQ05469 1076 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 TRIM16LQ309B1 348 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 PAGE3Q5JUK9 113 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 FAM26DQ5JW98 314 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ITIH5Q86UX2 942 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 MIER2Q8N344 545 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DQX1Q8TE96 717 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 SDCCAG3Q96C92 435 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 LRRC58Q96CX6 371 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 MAELQ96JY0 434 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 GSTO2Q9H4Y5 243 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 MEAF6Q9HAF1 191 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 TRIM17Q9Y577 477 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 TMEM247A6NEH6 219 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 M0QZ92 97 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 TNPO2O14787 897 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 GPR182O15218 404 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 SYNCRIPO60506 623 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 B4GALT3O60512 393 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ITGB1P05556 798 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 CTSHP09668 335 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 HSPA1AP0DMV8 641 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 HSPA1BP0DMV9 641 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ODC1P11926 461 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 PRKACGP22612 351 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ADSLP30566 484 aaPredicted RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 TMED10P49755 219 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 GSK3BP49841 420 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 RAD23AP54725 363 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DSC2Q02487 901 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DNASE1L3Q13609 305 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 SPIDRQ14159 915 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 USP41Q3LFD5 358 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 UGT3A2Q3SY77 523 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DENND5AQ6IQ26 1287 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DCDC5Q6ZRR9 648 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ABI1Q8IZP0 508 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 FBXO30Q8TB52 745 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 HM13Q8TCT9 377 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 VAT1Q99536 393 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 BEGAINQ9BUH8 593 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 C9orf16Q9BUW7 83 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 ALG2Q9H553 416 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 VPS45Q9NRW7 570 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 CCM2LQ9NUG4 571 aaPredicted RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 SMPD3Q9NY59 655 aaPredicted RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 IPO11Q9UI26 975 aaKnown RBP12.37□□□□□ -0.43
HDAC4-208ENST00000463007 DAPK2Q9UIK4 370 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 GREB1Q4ZG55 1949 aa12.37□□□□□ -0.43
HDAC4-208ENST00000463007 MTSS1O43312 755 aa12.36□□□□□ -0.43
HDAC4-208ENST00000463007 BMP10O95393 424 aa12.36□□□□□ -0.43
HDAC4-208ENST00000463007 RPLP2P05387 115 aaKnown RBP12.36□□□□□ -0.43
HDAC4-208ENST00000463007 CCNA2P20248 432 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms