RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LIN52Q52LA3 116 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 SLC39A5Q6ZMH5 540 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 RBM44Q6ZP01 1051 aaKnown RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 STK40Q8N2I9 435 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 FOPNLQ96NB1 174 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 ZNF558Q96NG5 402 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 BDH2Q9BUT1 245 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 EVLQ9UI08 416 aaPredicted RBP11.59□□□□□ -0.55
NPHP4-204ENST00000460696 ANAPC2Q9UJX6 822 aa11.59□□□□□ -0.55
NPHP4-204ENST00000460696 E7ENX8 843 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 H3BMM5 538 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SYN3O14994 580 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 INSIG1O15503 277 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 NIPSNAP2O75323 286 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 VPS4BO75351 444 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 MZF1P28698 734 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 RPL5P46777 297 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 MTA1Q13330 715 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 CRY1Q16526 586 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SFT2D3Q587I9 215 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 RALGPS2Q86X27 583 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 CAMK1DQ8IU85 385 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 TRPV1Q8NER1 839 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 TSPAN14Q8NG11 270 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ITFG1Q8TB96 612 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 GRIN3AQ8TCU5 1115 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 VPS33AQ96AX1 596 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 TSGA13Q96PP4 275 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 TLE6Q9H808 572 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 LEF1Q9UJU2 399 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 PRMT5O14744 637 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 DEAF1O75398 565 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FYNP06241 537 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FCGR1AP12314 374 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 KRT33BQ14525 404 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SLC5A9Q2M3M2 681 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FAM98BQ52LJ0 330 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ATXN7L2Q5T6C5 722 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ALKAL1Q6UXT8 129 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ADCY4Q8NFM4 1077 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 KCNN1Q92952 543 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 MAGEH1Q9H213 219 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SPASTQ9UBP0 616 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 EIF2B4Q9UI10 523 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FCF1Q9Y324 198 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 A0A0D9SEW6 157 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SLC22A3O75751 556 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 OR4F21O95013 312 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SNUPNO95149 360 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 IGSF6O95976 241 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 IDO1P14902 403 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 CKMT2P17540 419 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 GNAZP19086 355 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ADSLP30566 484 aaPredicted RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 LRRC74AQ0VAA2 488 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 LCP2Q13094 533 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 ZNF789Q5FWF6 425 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 PGBD3Q8N328 593 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 TTC9BQ8N6N2 239 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FAM47BQ8NA70 645 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 SIDT2Q8NBJ9 832 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 FBXO22Q8NEZ5 403 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 NAT14Q8WUY8 206 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 IGSF8Q969P0 613 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 GFM2Q969S9 779 aaKnown RBP11.58□□□□□ -0.56
NPHP4-204ENST00000460696 C9orf16Q9BUW7 83 aa11.58□□□□□ -0.56
NPHP4-204ENST00000460696 HMX2A2RU54 273 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ZNF623O75123 536 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ULK1O75385 1050 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ARSDP51689 593 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ECT2LQ008S8 904 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SMYD5Q6GMV2 418 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 CCDC81Q6ZN84 652 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 CACUL1Q86Y37 369 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 CILP2Q8IUL8 1156 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ANKLE1Q8NAG6 615 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 CLHC1Q8NHS4 586 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SELENOMQ8WWX9 145 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ZDHHC6Q9H6R6 413 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 COMMD8Q9NX08 183 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SCML2Q9UQR0 700 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 TNPO3Q9Y5L0 923 aaKnown RBP11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SLC38A8A6NNN8 435 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 G3V2L1 256 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 TMCC1O94876 653 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 CXCL14O95715 111 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SERPIND1P05546 499 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 IMPDH1P20839 514 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SERPINA4P29622 427 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 MAPKAPK2P49137 400 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 OCA2Q04671 838 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 PIK3R6Q5UE93 754 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ADAMTSL2Q86TH1 951 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ZBTB46Q86UZ6 589 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 C2CD4AQ8NCU7 369 aaPredicted RBP11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ZFRQ96KR1 1074 aaKnown RBP11.57□□□□□ -0.56
NPHP4-204ENST00000460696 SORT1Q99523 831 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 AKTIPQ9H8T0 292 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 ZBTB26Q9HCK0 441 aa11.57□□□□□ -0.56
NPHP4-204ENST00000460696 BRWD1Q9NSI6 2320 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms