RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 EPOP01588 193 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 ITGA2BP08514 1039 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 GPR3P46089 330 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 COPS2P61201 443 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 CCDC173Q0VFZ6 552 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 LLGL1Q15334 1064 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 CLPPQ16740 277 aaPredicted RBP19.24■□□□□ 0.67
USP40-207ENST00000450940 KAZNQ674X7 775 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 BBS12Q6ZW61 710 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 KDELC2Q7Z4H8 507 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 DAAM2Q86T65 1068 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 GALNT13Q8IUC8 556 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 VAT1Q99536 393 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 DPH1Q9BZG8 443 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 STRADBQ9C0K7 418 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 RAD18Q9NS91 495 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 EFR3BQ9Y2G0 817 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 REXO2Q9Y3B8 237 aaKnown RBP19.24■□□□□ 0.67
USP40-207ENST00000450940 PCDHA3Q9Y5H8 950 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 LOC285095A0A1B0GVY8 99 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 HACD1B0YJ81 288 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 PLD2O14939 933 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 CTNNA1P35221 906 aaKnown RBP19.23■□□□□ 0.67
USP40-207ENST00000450940 ACTR1BP42025 376 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 ACTR1AP61163 376 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 SQSTM1Q13501 440 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 PDPK2PQ6A1A2 396 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 KDELC1Q6UW63 502 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 RAB11FIP2Q7L804 512 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 GAS2L3Q86XJ1 694 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 SLITRK4Q8IW52 837 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 GPR26Q8NDV2 337 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 PATE1Q8WXA2 126 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 FOXP3Q9BZS1 431 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 EPB41L5Q9HCM4 733 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 ATXN7L1Q9ULK2 861 aaPredicted RBP19.23■□□□□ 0.67
USP40-207ENST00000450940 ZNF711Q9Y462 761 aa19.23■□□□□ 0.67
USP40-207ENST00000450940 PCYT1BQ9Y5K3 369 aaPredicted RBP19.23■□□□□ 0.67
USP40-207ENST00000450940 RHPN2P1A8MT19 583 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 PJA2O43164 708 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ZW10O43264 779 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 PMPCBO75439 489 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 TNFSF15O95150 251 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ASMTLO95671 621 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ATP1A1P05023 1023 aaKnown RBP19.22■□□□□ 0.67
USP40-207ENST00000450940 PIRTP0C851 137 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 UGT1A5P35504 534 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 XRCC4Q13426 336 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 PCSK7Q16549 785 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 SOWAHCQ53LP3 525 aaPredicted RBP19.22■□□□□ 0.67
USP40-207ENST00000450940 CCDC70Q6NSX1 233 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 RAD9BQ6WBX8 426 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 MARK2Q7KZI7 788 aaKnown RBP19.22■□□□□ 0.67
USP40-207ENST00000450940 TMPRSS9Q7Z410 1059 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ZC3H18Q86VM9 953 aaKnown RBP19.22■□□□□ 0.67
USP40-207ENST00000450940 ZNF567Q8N184 647 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 FBXO39Q8N4B4 442 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 TMEM159Q96B96 161 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 QKIQ96PU8 341 aaKnown RBP eCLIP19.22■□□□□ 0.67
USP40-207ENST00000450940 FCRL5Q96RD9 977 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ZSCAN5AQ9BUG6 496 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 CARD9Q9H257 536 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 FAM153AQ9UHL3 310 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 ZNHIT2Q9UHR6 403 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 SHOC2Q9UQ13 582 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 PCDHGA7Q9Y5G6 932 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 DUSP10Q9Y6W6 482 aa19.22■□□□□ 0.67
USP40-207ENST00000450940 APOC4-APOC2K7ER74 178 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 PPM1DO15297 605 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 NUAK1O60285 661 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 CPNE6O95741 557 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 APOC2P02655 101 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 HOXB3P14651 431 aaPredicted RBP19.21■□□□□ 0.67
USP40-207ENST00000450940 NFKB1P19838 968 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 PTPN7P35236 360 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 FASLGP48023 281 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 WNT3AP56704 352 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 OR1D5P58170 312 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 PIM3Q86V86 326 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 CCDC50Q8IVM0 306 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 TRAM1L1Q8N609 369 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 KCNE4Q8WWG9 221 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 HTR3CQ8WXA8 447 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 CCDC97Q96F63 343 aaPredicted RBP19.21■□□□□ 0.67
USP40-207ENST00000450940 GPR63Q9BZJ6 419 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 LACRTQ9GZZ8 138 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 UBP1Q9NZI7 540 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 ACSL6Q9UKU0 697 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 TRHDEQ9UKU6 1024 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 SPO11Q9Y5K1 396 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 ADGRG1Q9Y653 693 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 MGAQ8IWI9 3026 aa19.21■□□□□ 0.67
USP40-207ENST00000450940 GPR89AB7ZAQ6 455 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 IPO7O95373 1038 aaKnown RBP19.2■□□□□ 0.66
USP40-207ENST00000450940 GPR89BP0CG08 455 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 BPIP17213 487 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 CTNNA2P26232 953 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 CD1CP29017 333 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 ALDH4A1P30038 563 aa19.2■□□□□ 0.66
USP40-207ENST00000450940 NOMO1Q15155 1222 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms