RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DGKQP52824 942 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 OXCT1P55809 520 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 LCP2Q13094 533 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 PRKG2Q13237 762 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 NR1D2Q14995 579 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 GPR162Q16538 588 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 RETREG3Q86VR2 466 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ASB2Q96Q27 587 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 ACBD6Q9BR61 282 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 MEAF6Q9HAF1 191 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 WWOXQ9NZC7 414 aa11.82□□□□□ -0.52
MSH6-204ENST00000445503 KCNH1O95259 989 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 FKBP9O95302 570 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 F2P00734 622 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 CNPP09543 421 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 ARCN1P48444 511 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 IL2P60568 153 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 TNK2Q07912 1038 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 KLHL35Q6PF15 583 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 RANBP10Q6VN20 620 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 FKBP9P1Q75LS8 142 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ISCA2Q86U28 154 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 LRRTM3Q86VH5 581 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ARHGAP12Q8IWW6 846 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 NT5C3BQ969T7 300 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 PTERQ96BW5 349 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 VPS45Q9NRW7 570 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 COMMD8Q9NX08 183 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 PHF24Q9UPV7 400 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 PCDHGC4Q9Y5F7 938 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 NOBOXO60393 691 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 SNAP91O60641 907 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 OXTRP30559 389 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 APLP1P51693 650 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 MLLT6P55198 1093 aaPredicted RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 SLC2A7Q6PXP3 512 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ALKAL1Q6UXT8 129 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 GCNT7Q6ZNI0 430 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 EFL1Q7Z2Z2 1120 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 CMTR2Q8IYT2 770 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 SFRP1Q8N474 314 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 IRGQQ8WZA9 623 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 GLMNQ92990 594 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ISOC1Q96CN7 298 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 IL12RB2Q99665 862 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 GSTO2Q9H4Y5 243 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 EXD2Q9NVH0 621 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 POLG2Q9UHN1 485 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 PADI3Q9ULW8 664 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 RPP40O75818 363 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 CCNA2P20248 432 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ARNTP27540 789 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 RPL9P32969 192 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 RPL38P63173 70 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 GNA12Q03113 381 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 FAM171A1Q5VUB5 890 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 KIAA1841Q6NSI8 718 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ZNF554Q86TJ5 538 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ADCK1Q86TW2 530 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 TMEM126BQ8IUX1 230 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 CCDC117Q8IWD4 279 aaPredicted RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 SIDT2Q8NBJ9 832 aaKnown RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 OR10Q1Q8NGQ4 319 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 OR10T2Q8NGX3 314 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 BRI3BPQ8WY22 251 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 ATP13A1Q9HD20 1204 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 SMPD4Q9NXE4 827 aa11.81□□□□□ -0.52
MSH6-204ENST00000445503 POLR3HQ9Y535 204 aaPredicted RBP11.81□□□□□ -0.52
MSH6-204ENST00000445503 UTRNP46939 3433 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 NIPSNAP2O75323 286 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 CELF2O95319 508 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 S1PR4O95977 384 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 GJA5P36382 358 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ZBED5Q49AG3 693 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 PM20D1Q6GTS8 502 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 DENND5AQ6IQ26 1287 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 GALNT18Q6P9A2 607 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 SAPCD2Q86UD0 394 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 CPNE9Q8IYJ1 553 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 TBC1D21Q8IYX1 336 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 TRPV3Q8NET8 790 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 TSGA13Q96PP4 275 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 SELENONQ9NZV5 590 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 KIF17Q9P2E2 1029 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 KLQ9UEF7 1012 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ZNF229Q9UJW7 825 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 VPS28Q9UK41 221 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 BLOC1S6Q9UL45 172 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ALDOCP09972 364 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 AKT1P31749 480 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 CAPGP40121 348 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ARHGDIAP52565 204 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 OR4D1Q15615 310 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 SPOUT1Q5T280 376 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 MON1AQ86VX9 555 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 CROCCP3Q8IVE0 287 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 CHERPQ8IWX8 916 aaKnown RBP11.8□□□□□ -0.52
MSH6-204ENST00000445503 HM13Q8TCT9 377 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ISL2Q96A47 359 aa11.8□□□□□ -0.52
MSH6-204ENST00000445503 ZNF597Q96LX8 424 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms