RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TCF12Q99081 682 aa17.12■□□□□ 0.33
PTPRF-209ENST00000438120 NOL11Q9H8H0 719 aaKnown RBP17.12■□□□□ 0.33
PTPRF-209ENST00000438120 TMEM88BA6NKF7 163 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 MT-CYBP00156 380 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 LMO2P25791 158 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 LRRC73Q5JTD7 316 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ANKRD22Q5VYY1 191 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 LPCAT4Q643R3 524 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 LBX2Q6XYB7 198 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 OR2T12Q8NG77 320 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 RELTQ969Z4 430 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 KCND1Q9NSA2 647 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 BTBD3Q9Y2F9 522 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 G3V2T6 193 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ATG13O75143 517 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 NAE1Q13564 534 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 CPT1BQ92523 772 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 CLPTM1LQ96KA5 538 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 RPL10LQ96L21 214 aaKnown RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 C9IYK1 514 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 LIN7AO14910 233 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 NOL4O94818 638 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 OR5F1O95221 314 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 GJA9P57773 515 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SMIM11AP58511 58 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SEMG2Q02383 582 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 MBTD1Q05BQ5 628 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 DEPDC4Q8N2C3 294 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ARL14EPQ8N8R7 260 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF248Q8NDW4 579 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 EVA1BQ9NVM1 165 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 PLLPQ9Y342 182 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 TPP2P29144 1249 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 PRSS55Q6UWB4 352 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 CPA6Q8N4T0 437 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SLC4A11Q8NBS3 891 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 B3GALT6Q96L58 329 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SLC9A7Q96T83 725 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 GPN3Q9UHW5 284 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 MGRN1O60291 552 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 IPO13O94829 963 aaKnown RBP17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ARL2P36404 184 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF132P52740 706 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 FKBP1BP68106 108 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 GRM3Q14832 879 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SLC1A5Q15758 541 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 CFAP206Q8IYR0 622 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 SLC44A1Q8WWI5 657 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 XAGE5Q8WWM1 108 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 TMEM138Q9NPI0 162 aa17.11■□□□□ 0.33
PTPRF-209ENST00000438120 ICAM3P32942 547 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 HSPA7P48741 367 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 NAA20P61599 178 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 DMPKQ09013 629 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF460Q14592 562 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 FUT10Q6P4F1 479 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TAC4Q86UU9 113 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PIH1D2Q8WWB5 315 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 KCTD5Q9NXV2 234 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 NRP2O60462 931 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 SIN3BO75182 1162 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PRAMEF1O95521 474 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TFPIP10646 304 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 SPAM1P38567 509 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 CDKN2BP42772 138 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TTC27Q6P3X3 843 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF662Q6ZS27 426 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 ZHX1-C8orf76Q96EF9 292 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 HTATIP2Q9BUP3 242 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 RACGAP1Q9H0H5 632 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 MAP4K5Q9Y4K4 846 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 AP4B1Q9Y6B7 739 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 SPATA31D1Q6ZQQ2 1576 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 C5orf60A6NFR6 353 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 ATXN1P54253 815 aaKnown RBP17.1■□□□□ 0.33
PTPRF-209ENST00000438120 CRY2Q49AN0 593 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TFAP2BQ92481 460 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 LRTM1Q9HBL6 345 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PHPT1Q9NRX4 125 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-209ENST00000438120 LRIG2O94898 1065 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 GSTT1P30711 240 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PEX6Q13608 980 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 VPS26BQ4G0F5 336 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 SPOCK2Q92563 424 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 EXOSC8Q96B26 276 aaKnown RBP17.1■□□□□ 0.33
PTPRF-209ENST00000438120 GBA3Q9H227 469 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TRMT13Q9NUP7 481 aaKnown RBP17.1■□□□□ 0.33
PTPRF-209ENST00000438120 DNAJC11Q9NVH1 559 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 GTF2IRD1Q9UHL9 959 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 NDRG2Q9UN36 371 aaKnown RBP17.1■□□□□ 0.33
PTPRF-209ENST00000438120 MYBPHLA2RUH7 354 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TAB1Q15750 504 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PLEKHG4Q58EX7 1191 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 HGSNATQ68CP4 663 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 HPS6Q86YV9 775 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 ATP6V1C2Q8NEY4 427 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 TWIST2Q8WVJ9 160 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 AZIN2Q96A70 460 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 PTPN18Q99952 460 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 C3orf14Q9HBI5 128 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms