RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 MT-CO1P00395 513 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 ATP6V1B1P15313 513 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CXCR2P25025 360 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 GSSP48637 474 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 PRKAA2P54646 552 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 SLC7A9P82251 487 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 TCEAL1Q15170 157 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 MILR1Q7Z6M3 343 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 TSEN2Q8NCE0 465 aaKnown RBP12.87□□□□□ -0.35
PTCH1-207ENST00000429896 NELL2Q99435 816 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 NOD2Q9HC29 1040 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 CYP8B1Q9UNU6 501 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 COLEC10Q9Y6Z7 277 aa12.87□□□□□ -0.35
PTCH1-207ENST00000429896 GSTM1P09488 218 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 GRK2P25098 689 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ALDH9A1P49189 494 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 GSCP56915 257 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 DNAJC3Q13217 504 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ZBTB2Q8N680 514 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TBATAQ96M53 351 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 CDK5RAP2Q96SN8 1893 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ISM1B1AKI9 464 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM189A1O60320 539 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ABLIM3O94929 683 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 PRIM2P49643 509 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 CCR3P51677 355 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 CACNA2D1P54289 1103 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TMEM25Q86YD3 366 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ITFG1Q8TB96 612 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 A0A088AWK7 358 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 C16orf96A6NNT2 1141 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM72CH0Y354 149 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 APOA1P02647 267 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ANXA6P08133 673 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF10P21506 573 aaPredicted RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 INAVAQ3KP66 663 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM72AQ5TYM5 149 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM72DQ6L9T8 149 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 SERPINA9Q86WD7 417 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM72BQ86X60 149 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 AZIN2Q96A70 460 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ERP27Q96DN0 273 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 CNDP1Q96KN2 507 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 POMKQ9H5K3 350 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 MFHAS1Q9Y4C4 1052 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 GNG14A0A1W2PPG7 69 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 CCNDBP1O95273 360 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 DRD1P21728 446 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TARSP26639 723 aaKnown RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 SEMG2Q02383 582 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 KHDRBS2Q5VWX1 349 aaKnown RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TTC27Q6P3X3 843 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 FAM9CQ8IZT9 166 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 UBR7Q8N806 425 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ECSITQ9BQ95 431 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 LINC00597Q9H2U6 94 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 OR2AG2A6NM03 316 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 GOT2P00505 430 aaKnown RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ALPIP09923 528 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ARSAP15289 507 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 S100A5P33763 92 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 NUDT2P50583 147 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 SEC24CP53992 1094 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ATP6V0D1P61421 351 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 SCAPQ12770 1279 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TP53BP2Q13625 1128 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 TOMM20Q15388 145 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ARHGAP36Q6ZRI8 547 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 LINGO1Q96FE5 620 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 DNAJC1Q96KC8 554 aaKnown RBP12.86□□□□□ -0.35
PTCH1-207ENST00000429896 GMEB2Q9UKD1 530 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 SOX13Q9UN79 622 aa12.86□□□□□ -0.35
PTCH1-207ENST00000429896 ZNF30P17039 623 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 FEN1P39748 380 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 SERPINB4P48594 390 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 UMODL1-AS1Q8N2C9 162 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 KCNN1Q92952 543 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 UBE2E3Q969T4 207 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 MTFMTQ96DP5 389 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 FANCEQ9HB96 536 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 KLQ9UEF7 1012 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 VWA7Q9Y334 891 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 RHPN2P1A8MT19 583 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 PKMP14618 531 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 NTSR1P30989 418 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 SEMA5AQ13591 1074 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 FAM78AQ5JUQ0 283 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 DGKKQ5KSL6 1271 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 TMEM154Q6P9G4 183 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 ADAMTSL2Q86TH1 951 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 FIBINQ8TAL6 211 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 CAAP1Q9H8G2 361 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 USP15Q9Y4E8 981 aaPredicted RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 RAB41Q5JT25 222 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 HTR3DQ70Z44 454 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 DEFB119Q8N690 84 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 PQLC3Q8N755 202 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 TXNDC5Q8NBS9 432 aaKnown RBP12.85□□□□□ -0.35
PTCH1-207ENST00000429896 CEP44Q9C0F1 390 aa12.85□□□□□ -0.35
PTCH1-207ENST00000429896 RSPH9Q9H1X1 276 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms