RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RENP00797 406 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GLI1P08151 1106 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC7A1P30825 629 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC12A3P55017 1021 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CAV3P56539 151 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 KCNA10Q16322 511 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PLA2G4EQ3MJ16 856 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 LDLRAP1Q5SW96 308 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 POMZP3Q6PJE2 187 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DNM1P34Q6PK57 102 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 VASH1Q7L8A9 365 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC29A4Q7RTT9 530 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PLCZ1Q86YW0 608 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SNX33Q8WV41 574 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CERS2Q96G23 380 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CDRT15Q96T59 188 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GPR20Q99678 358 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PDCD2LQ9BRP1 358 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PFDN2Q9UHV9 154 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 FBXO9Q9UK97 447 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TMPRSS11EQ9UL52 423 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MYH7BA7E2Y1 1941 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GMFGO60234 142 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 UGT2B11O75310 529 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TNFP01375 233 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ALADP13716 330 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SDC2P34741 201 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 HSD17B2P37059 387 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MLLT3P42568 568 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PRMT2P55345 433 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RPL38P63173 70 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GXYLT1Q4G148 440 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CWF19L1Q69YN2 538 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC25A25Q6KCM7 469 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM17Q86X19 198 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 HIPK1Q86Z02 1210 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ANKRD52Q8NB46 1076 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CHST4Q8NCG5 386 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MPP4Q96JB8 637 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SCGB3A2Q96PL1 93 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PSKH2Q96QS6 385 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC28BQ9BUN5 200 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GGA2Q9UJY4 613 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CLEC4AQ9UMR7 237 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 NDRG2Q9UN36 371 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 C2CD2Q9Y426 696 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM150CB9EJG8 249 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ADM5C9JUS6 153 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CD2P06729 351 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 HCAR3P49019 387 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DPYSL3Q14195 570 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SMIM5Q71RC9 77 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TC2NQ8N9U0 490 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 BPIFB6Q8NFQ5 453 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SPPL2BQ8TCT7 592 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 OVCA2Q8WZ82 227 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MCMBPQ9BTE3 642 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DDX18Q9NVP1 670 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DNAAF2Q9NVR5 837 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 WASF3Q9UPY6 502 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TRBC1P01850 177 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 KDELR1P24390 212 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PTX3P26022 381 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MC4RP32245 332 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 KCNJ5P48544 419 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF143P52747 638 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CACNA2D1P54289 1103 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ACTR1AP61163 376 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TBX2Q13207 712 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 HECTD2Q5U5R9 776 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ERICH5Q6P6B1 374 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 AKAP1Q92667 903 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 NOL6Q9H6R4 1146 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TUBA8Q9NY65 449 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RDH8Q9NYR8 311 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RPL26L1Q9UNX3 145 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PRKAB1Q9Y478 270 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 PCDHGB2Q9Y5G2 931 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SPIN1Q9Y657 262 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TECPR2O15040 1411 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 FPGTO14772 594 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CASKO14936 926 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CA12O43570 354 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SELPP16109 830 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 RARRES1P49788 294 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ARF3P61204 181 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CYP4F2P78329 520 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ARF1P84077 181 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC34A1Q06495 639 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 SLC20A2Q08357 652 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CYP4F3Q08477 520 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 MRPL49Q13405 166 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 DGCR6Q14129 220 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 TARBP2Q15633 366 aaKnown RBP6.83□□□□□ -1.32
SCN1A-204ENST00000423058 UNQ6126/PRO20091Q6UXV3 157 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 CYP2R1Q6VVX0 501 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ARHGAP36Q6ZRI8 547 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 LCN9Q8WX39 176 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF670Q9BS34 389 aa6.83□□□□□ -1.32
SCN1A-204ENST00000423058 GPR88Q9GZN0 384 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms