RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SPAG4Q9NPE6 437 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 KIF1CO43896 1103 aaKnown RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 GALTP07902 379 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 COL6A2P12110 1019 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CHN2P52757 468 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 IL1RL1Q01638 556 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 RAD51Q06609 339 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 FAM45BPQ6NSW5 357 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 RBM44Q6ZP01 1051 aaKnown RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 DHFR2Q86XF0 187 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 TRIML2Q8N7C3 387 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 FAM45AQ8TCE6 357 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 MFSD1Q9H3U5 465 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 TRIM38O00635 465 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 MTX2O75431 263 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 SEC24AO95486 1093 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CKMP06732 381 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CYP4F8P98187 520 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 IL10RBQ08334 325 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 DSC1Q08554 894 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ADGRE1Q14246 886 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CNPY1Q3B7I2 92 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CLYBLQ8N0X4 340 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 BRSK1Q8TDC3 778 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ZNF483Q8TF39 744 aaPredicted RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 CENPKQ9BS16 269 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 MCMBPQ9BTE3 642 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 MARCH5Q9NX47 278 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 SEPT3Q9UH03 358 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ANGPTL3Q9Y5C1 460 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 SLC30A1Q9Y6M5 507 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CROCCQ5TZA2 2017 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 PRAMEF11O60813 436 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 LIN52Q52LA3 116 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 IL27RAQ6UWB1 636 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 LYSMD3Q7Z3D4 306 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 CNTN4Q8IWV2 1026 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 TUBB1Q9H4B7 451 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 CD84Q9UIB8 345 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 ARHGAP10A1A4S6 786 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 NPHS1O60500 1241 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 SYNCRIPO60506 623 aaKnown RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 NDST3O95803 873 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 EFNA1P20827 205 aaPredicted RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 HERVK_113P63132 956 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 TRIM25Q14258 630 aaKnown RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 HECTD3Q5T447 861 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 ANKS6Q68DC2 871 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 FUNDC1Q8IVP5 155 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 WFDC5Q8TCV5 224 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 PRICKLE1Q96MT3 831 aaPredicted RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 ERVK-6Q9BXR3 956 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 NDUFAF1Q9Y375 327 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 PLOD2O00469 737 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 PARNO95453 639 aaKnown RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 ATP6V1B2P21281 511 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 HOXD9P28356 352 aaPredicted RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 YAP1P46937 504 aaKnown RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 HSPA7P48741 367 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 HTR6P50406 440 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 ZNF135P52742 658 aaPredicted RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 CYP51A1Q16850 503 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 SLC22A9Q8IVM8 553 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 ARHGAP18Q8N392 663 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 METTL6Q8TCB7 284 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 DEFB118Q96PH6 123 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 UPF3AQ9H1J1 476 aaKnown RBP13.31□□□□□ -0.28
VPS54-203ENST00000409558 POLG2Q9UHN1 485 aa13.31□□□□□ -0.28
VPS54-203ENST00000409558 SMAD6O43541 496 aaKnown RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 TMCC1O94876 653 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 VNN2O95498 520 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 SQLEQ14534 574 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 NR6A1Q15406 480 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 CYHR1Q6ZMK1 362 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 ZNF786Q8N393 782 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 VPS50Q96JG6 964 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 UBXN10Q96LJ8 280 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 C8orf48Q96LL4 319 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 ANKRD27Q96NW4 1050 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 TRPM5Q9NZQ8 1165 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 PDP2Q9P2J9 529 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 CACNG3O60359 315 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 FGF1P05230 155 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 STC1P52823 247 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 MTPNP58546 118 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 HMGCS1Q01581 520 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 TRAF2Q12933 501 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 PLCL1Q15111 1095 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 GPSM1Q86YR5 675 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 SLC22A15Q8IZD6 547 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 PFDN4Q9NQP4 134 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 PRPF19Q9UMS4 504 aaKnown RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 TRIM71Q2Q1W2 868 aaKnown RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 SETD3Q86TU7 594 aaPredicted RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 C1orf232A0A0U1RR37 186 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 C7orf72A4D263 438 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 RTN3O95197 1032 aaPredicted RBP13.3□□□□□ -0.28
VPS54-203ENST00000409558 MTHFD2P13995 350 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 NFKBIAP25963 317 aa13.3□□□□□ -0.28
VPS54-203ENST00000409558 OXTRP30559 389 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms