RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 POMCP01189 267 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 NR1D2Q14995 579 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 ZNHIT2Q9UHR6 403 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 HS3ST4Q9Y661 456 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 AGXTP21549 392 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 PRKACGP22612 351 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 ZFP36L2P47974 494 aaKnown RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 LSM3P62310 102 aaKnown RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 INTS6LQ5JSJ4 861 aaKnown RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 SIRPB2Q5JXA9 342 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 EGFLAMQ63HQ2 1017 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 FAR2Q96K12 515 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 PPP1R10Q96QC0 940 aaKnown RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 C9orf16Q9BUW7 83 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 MROH8Q9H579 483 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 TRIM64CA6NLI5 447 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 SUPT3HB4E1H0 165 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 GOT2P00505 430 aaKnown RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 MMP2P08253 660 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 DCKP27707 260 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 ARL1P40616 181 aaPredicted RBP20.88■□□□□ 0.93
CTCF-202ENST00000401394 DGKQP52824 942 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 LCN8Q6JVE9 175 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 FAM117BQ6P1L5 589 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 SPRED1Q7Z699 444 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 PGBD5Q8N414 524 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 OR10T2Q8NGX3 314 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 COX4I2Q96KJ9 171 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 GLT1D1Q96MS3 346 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 NTN4Q9HB63 628 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 INVSQ9Y283 1065 aa20.88■□□□□ 0.93
CTCF-202ENST00000401394 NYNRINQ9P2P1 1898 aaKnown RBP20.87■□□□□ 0.93
CTCF-202ENST00000401394 PEX11BO96011 259 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 TSNQ15631 228 aaKnown RBP20.87■□□□□ 0.93
CTCF-202ENST00000401394 BLOC1S3Q6QNY0 202 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 ROPN1LQ96C74 230 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PGAP3Q96FM1 320 aaPredicted RBP20.87■□□□□ 0.93
CTCF-202ENST00000401394 NANOGQ9H9S0 305 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 E9PAM4 449 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 HMBSP08397 361 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 CD97P48960 835 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 ACADVLP49748 655 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PPIL2Q13356 520 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 MEP1AQ16819 746 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PAQR3Q6TCH7 311 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 STK32CQ86UX6 486 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PDZD8Q8NEN9 1154 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PRDM8Q9NQV8 689 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PCDHGA4Q9Y5G9 962 aa20.87■□□□□ 0.93
CTCF-202ENST00000401394 PDCD11Q14690 1871 aaKnown RBP20.86■□□□□ 0.93
CTCF-202ENST00000401394 GPR15P49685 360 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 AQP6Q13520 282 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 SPCS2Q15005 226 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 UTS2BQ765I0 119 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 ZUFSPQ96AP4 578 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 MYEOVQ96EZ4 313 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 NEURL2Q9BR09 285 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 SACM1LQ9NTJ5 587 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 COL1A2P08123 1366 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 KANSL1LA0AUZ9 987 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 CCDC162PA2VCL2 907 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 AQP12BA6NM10 295 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 MUSKO15146 869 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 F9P00740 461 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 FMO4P31512 558 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 PIGAP37287 484 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 CLCN5P51795 746 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 ZNF829Q3KNS6 432 aaPredicted RBP20.86■□□□□ 0.93
CTCF-202ENST00000401394 XAF1Q6GPH4 301 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 AQP12AQ8IXF9 295 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 ANKRD13AQ8IZ07 590 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 MINDY1Q8N5J2 469 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 DDHD1Q8NEL9 900 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 LZICQ8WZA0 190 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 FEM1CQ96JP0 617 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 EPS8L2Q9H6S3 715 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 AGO3Q9H9G7 860 aaKnown RBP20.86■□□□□ 0.93
CTCF-202ENST00000401394 SDR39U1Q9NRG7 319 aaPredicted RBP20.86■□□□□ 0.93
CTCF-202ENST00000401394 GPR45Q9Y5Y3 372 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 USP34Q70CQ2 3546 aa20.86■□□□□ 0.93
CTCF-202ENST00000401394 PTGES3LE9PB15 166 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 IRAK2O43187 625 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 CRCPO75575 148 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 SERPINB7O75635 380 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 PARNO95453 639 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 KPNA2P52292 529 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 LAPTM4AQ15012 233 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 XKR4Q5GH76 650 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 PIK3R6Q5UE93 754 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 DNAJC14Q6Y2X3 702 aaPredicted RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 R3HCC1LQ7Z5L2 792 aaKnown RBP20.85■□□□□ 0.93
CTCF-202ENST00000401394 TNIP2Q8NFZ5 429 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 MAML3Q96JK9 1138 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 MAF1Q9H063 256 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 CDH7Q9ULB5 785 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 LDB2O43679 373 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 B3GAT3O94766 335 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 HSD17B1P14061 328 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 LBPP18428 481 aa20.85■□□□□ 0.93
CTCF-202ENST00000401394 IDUAP35475 653 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms