RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CD44P16070 742 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 AQP1P29972 269 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SLC26A3P40879 764 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 GRK6P43250 576 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MAPK12P53778 367 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SNTA1Q13424 505 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 EEF1DP3Q658K8 133 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CERS6Q6ZMG9 384 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TMPRSS11AQ6ZMR5 421 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 FRRS1Q6ZNA5 592 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PACS2Q86VP3 889 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ZSCAN1Q8NBB4 408 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 OR4K2Q8NGD2 314 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SETD6Q8TBK2 473 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PIH1D2Q8WWB5 315 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ZBTB10Q96DT7 871 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PTPN18Q99952 460 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 NKIRAS2Q9NYR9 191 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 GMIPQ9P107 970 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SIRPGQ9P1W8 387 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MORF4L1Q9UBU8 362 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MTF2Q9Y483 593 aaPredicted RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 CPQQ9Y646 472 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CLCA3PQ9Y6N3 262 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 RIIAD1A6NNX1 92 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CHADO15335 359 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 STK16O75716 305 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PKMP14618 531 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 ARF4P18085 180 aaPredicted RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 CAPZA1P52907 286 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SEMA5AQ13591 1074 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SLC30A6Q6NXT4 461 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 KCTD8Q6ZWB6 473 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 OTOP3Q7RTS5 596 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 KATNAL2Q8IYT4 538 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SAMD14Q8IZD0 417 aaPredicted RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 MEIOBQ8N635 442 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 LRRC17Q8N6Y2 441 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 KCT2Q8NC54 265 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 AP3S1Q92572 193 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 DLG3Q92796 817 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 POP5Q969H6 163 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 TMEM125Q96AQ2 219 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SMURF2Q9HAU4 748 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TMBIM4Q9HC24 238 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 NINJ2Q9NZG7 142 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 XPR1Q9UBH6 696 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PCDHB1Q9Y5F3 818 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CLUHO75153 1309 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 A0A1W2PQH9 124 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 RGSL1A5PLK6 1076 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ZNF726A6NNF4 738 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MSI1O43347 362 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 NOL4O94818 638 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 INHAP05111 366 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SYN1P17600 705 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 KIR3DL1P43629 444 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CACNA2D1P54289 1103 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 YBEYP58557 167 aaPredicted RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 PPIDQ08752 370 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 SQLEQ14534 574 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SEC23AQ15436 765 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MED22Q15528 200 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PYDC2Q56P42 97 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 NPNTQ6UXI9 565 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PTCHD4Q6ZW05 846 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ARMCX6Q7L4S7 300 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CENPSQ8N2Z9 138 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ARL14EPQ8N8R7 260 aaPredicted RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 FAM46DQ8NEK8 389 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 OR2AJ1Q8NGZ0 328 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TRPM4Q8TD43 1214 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 BRSK1Q8TDC3 778 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 C1GALT1C1Q96EU7 318 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 LGMNQ99538 433 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ACO2Q99798 780 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 IFT52Q9Y366 437 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 RAI2Q9Y5P3 530 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 A8MUI8 341 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ARHGEF33A8MVX0 844 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 LGR5O75473 907 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CST1P01037 141 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 OGNP20774 298 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 GDI1P31150 447 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ASMTP46597 345 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 GRIA4P48058 902 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ACLYP53396 1101 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 FKBP1AP62942 108 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 PRR5P85299 388 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TLR1Q15399 786 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TIGD2Q4W5G0 525 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 C12orf56Q8IXR9 622 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 DBF4BQ8NFT6 615 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ACDQ96AP0 544 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MAML3Q96JK9 1138 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TSPAN18Q96SJ8 248 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 ZNF670Q9BS34 389 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CHID1Q9BWS9 393 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TBL1XR1Q9BZK7 514 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 RXFP1Q9HBX9 757 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms