RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ETV3P41162 512 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 HALP42357 657 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 RANBP1P43487 201 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 NME5P56597 212 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 POU4F1Q01851 419 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 SLC34A1Q06495 639 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 FAM83EQ2M2I3 478 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 LRRC66Q68CR7 880 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ARHGAP22Q7Z5H3 698 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 LRRC49Q8IUZ0 686 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 FAM160A2Q8N612 972 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-205ENST00000392004 FAM46DQ8NEK8 389 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 B4GALNT2Q8NHY0 566 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 SPOCK2Q92563 424 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 MYEOVQ96EZ4 313 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 SYT11Q9BT88 431 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 HGH1Q9BTY7 390 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 GBA3Q9H227 469 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ZMYM5Q9UJ78 669 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 KCNK6Q9Y257 313 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 MTCH2Q9Y6C9 303 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 TTC36A6NLP5 189 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 C16orf96A6NNT2 1141 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 CD3EAPO15446 510 aaKnown RBP10.27□□□□□ -0.77
COL6A3-205ENST00000392004 PGAM1P18669 254 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF776Q68DI1 518 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-205ENST00000392004 LRRC74BQ6ZQY2 392 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 OOSP2Q86WS3 158 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 RAB42Q8N4Z0 105 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 UBR7Q8N806 425 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 SLCO2A1Q92959 643 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 MTFMTQ96DP5 389 aaKnown RBP10.27□□□□□ -0.77
COL6A3-205ENST00000392004 NSL1Q96IY1 281 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 IL12RB2Q99665 862 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 GORASP1Q9BQQ3 440 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 NAT9Q9BTE0 207 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ALG9Q9H6U8 611 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 ARL15Q9NXU5 204 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 TAS2R13Q9NYV9 303 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 OTOFQ9HC10 1997 aa10.27□□□□□ -0.77
COL6A3-205ENST00000392004 FAM95CA0A1B0GW59 222 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 CHEK2O96017 543 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 CCDC166P0CW27 439 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 GNPDA1P46926 289 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 RFX3P48380 749 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 CSTF1Q05048 431 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 EOGTQ5NDL2 527 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 LVRNQ6Q4G3 990 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TSPAN33Q86UF1 283 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TRABD2AQ86V40 505 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 MFSD6LQ8IWD5 586 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 OVCA2Q8WZ82 227 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TSPAN17Q96FV3 270 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 STN1Q9H668 368 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TMEM248Q9NWD8 314 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 LNPEPQ9UIQ6 1025 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 A0A1W2PQ67 120 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 A0A1W2PQU0 124 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 IGLON5A6NGN9 336 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 NEK3P51956 506 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 ARFIP2P53365 341 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 AP1S1P61966 158 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 PPIDQ08752 370 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 CAMK2GQ13555 558 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 KPNB1Q14974 876 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 ANKRD20A4Q4UJ75 823 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 KHDC1Q4VXA5 237 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TMEM220Q6QAJ8 160 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SCIMPQ6UWF3 145 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 LAYNQ6UX15 382 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SLC26A11Q86WA9 606 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 WFIKKN2Q8TEU8 576 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 E2F7Q96AV8 911 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 BTBD10Q9BSF8 475 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TSSK1BQ9BXA7 367 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 ZCCHC2Q9C0B9 1178 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 PHPT1Q9NRX4 125 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 OR1A2Q9Y585 309 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 ISM1B1AKI9 464 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SCNN1AP37088 669 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 CLDN2P57739 230 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 TCEAL1Q15170 157 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 USP39Q53GS9 565 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 RAB41Q5JT25 222 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SIRPB2Q5JXA9 342 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 NKD2Q969F2 451 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SLC7A6OSQ96CW6 309 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 OXNAD1Q96HP4 312 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF778Q96MU6 729 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 EBNA1BP2Q99848 306 aaKnown RBP10.26□□□□□ -0.77
COL6A3-205ENST00000392004 FAM192AQ9GZU8 254 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 RHBGQ9H310 441 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 SOHLH2Q9NX45 425 aa10.26□□□□□ -0.77
COL6A3-205ENST00000392004 EDDM13A0A1B0GTR0 161 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 TCRBV9S1A1TA0A576 114 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 ANKRD66B4E2M5 251 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 PRAMEF11O60813 436 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 KRT36O76013 467 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 AP2A1O95782 977 aa10.25□□□□□ -0.77
COL6A3-205ENST00000392004 BAG2O95816 211 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms