RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TCHHL1Q5QJ38 904 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 FAM182AQ5T1J6 154 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TMEM154Q6P9G4 183 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 FAM20CQ8IXL6 584 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 FAM46DQ8NEK8 389 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 BPIFB1Q8TDL5 484 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PIGKQ92643 395 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PROX1Q92786 737 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 IGSF21Q96ID5 467 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 BRINP2Q9C0B6 783 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CCDC189A1A4V9 331 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SLC7A4O43246 635 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TFPIP10646 304 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SLC39A5Q6ZMH5 540 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SLC35B2Q8TB61 432 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TTLL2Q9BWV7 592 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 DNAJB4Q9UDY4 337 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PCDHB11Q9Y5F2 797 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 AKAP12Q02952 1782 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 MTMR11A4FU01 709 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 EPHA3P29320 983 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 MAGEA11P43364 429 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PKNOX1P55347 436 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 NFATC2Q13469 925 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 RFTN1Q14699 578 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 HFE2Q6ZVN8 426 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CUZD1Q86UP6 607 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CD101Q93033 1021 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 GAL3ST4Q96RP7 486 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CNPPD1Q9BV87 410 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ATG10Q9H0Y0 220 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CARS2Q9HA77 564 aaKnown RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF446Q9NWS9 450 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SLC17A7Q9P2U7 560 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ILVBLA1L0T0 632 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 HCRTO43612 131 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 STK16O75716 305 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 APOA1P02647 267 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ATP6V1B1P15313 513 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 S100A5P33763 92 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SNX30Q5VWJ9 437 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 C16orf62Q7Z3J2 963 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 RNF168Q8IYW5 571 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CMTM8Q8IZV2 173 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ITFG1Q8TB96 612 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 GDPD5Q8WTR4 605 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 FCRL5Q96RD9 977 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 H3BN98 237 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PIRO00625 290 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF8P17098 575 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 PSMC3P17980 439 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 POLD2P49005 469 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 GDF10P55107 478 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 C10orf107Q8IVU9 208 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF599Q96NL3 588 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TRIT1Q9H3H1 467 aaKnown RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 MMADHCQ9H3L0 296 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SLCO1B3Q9NPD5 702 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 EIF2B3Q9NR50 452 aaKnown RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 FBXL12Q9NXK8 326 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ADAMTS5Q9UNA0 930 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 DUOX1Q9NRD9 1551 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TRAFD1O14545 582 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TM7SF2O76062 418 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 KCNH1O95259 989 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 HNRNPH1P31943 449 aaKnown RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SSR2P43308 183 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 RXRGP48443 463 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CRELD2Q6UXH1 353 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 TMEM26Q6ZUK4 368 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 CMASQ8NFW8 434 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 C1orf50Q9BV19 199 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 INSL5Q9Y5Q6 135 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 LAMTOR5O43504 91 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 SNRPB2P08579 225 aaKnown RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 HOXD13P35453 343 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 HK2P52789 917 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 ESRP1Q6NXG1 681 aaKnown RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 IZUMO2Q6UXV1 221 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 R3HCC1LQ7Z5L2 792 aaKnown RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 CPNE8Q86YQ8 564 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 BRSK1Q8TDC3 778 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 MRPS33Q9Y291 106 aaKnown RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 EDF1O60869 148 aaKnown RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 SLC25A12O75746 678 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 GALTP07902 379 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 EN2P19622 333 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 IL1R2P27930 398 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 KCNQ1P51787 676 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 IRF5Q13568 498 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 OTUD3Q5T2D3 398 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 KIAA0930Q6ICG6 404 aaPredicted RBP11.52□□□□□ -0.56
SYNE1-204ENST00000367248 TCAIMQ8N3R3 496 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 MCMBPQ9BTE3 642 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 NEUROD4Q9HD90 331 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 FNIP2Q9P278 1114 aa11.52□□□□□ -0.56
SYNE1-204ENST00000367248 LTN1O94822 1766 aa11.52□□□□□ -0.57
SYNE1-204ENST00000367248 ERN1O75460 977 aaKnown RBP11.52□□□□□ -0.57
SYNE1-204ENST00000367248 ESR1P03372 595 aa11.52□□□□□ -0.57
SYNE1-204ENST00000367248 HIST1H2ABP04908 130 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms