RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RASA4O43374 803 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 C9P02748 559 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 PLEKP08567 350 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 ANKRD34CP0C6C1 535 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SLC9A1P19634 815 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 LHCGRP22888 699 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 MAN1A1P33908 653 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 GARSP41250 739 aaKnown RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 GABRB2P47870 512 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 PPM1FP49593 454 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SEPHS1P49903 392 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 KRTAP10-9P60411 292 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 HHEXQ03014 270 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 RAPSNQ13702 412 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 CHRNA6Q15825 494 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 ZXDCQ2QGD7 858 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 PYCR3Q53H96 274 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 FAM102AQ5T9C2 384 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 LCN10Q6JVE6 187 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 MARK2Q7KZI7 788 aaKnown RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SRLQ86TD4 932 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 TRIM59Q8IWR1 403 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 MEIOBQ8N635 442 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 TSEN2Q8NCE0 465 aaKnown RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 NUS1Q96E22 293 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 C9orf72Q96LT7 481 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 OR2M4Q96R27 311 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 TSG101Q99816 390 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SYNCQ9H7C4 482 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SARS2Q9NP81 518 aaKnown RBP8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 ACSS2Q9NR19 701 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 PADI1Q9ULC6 663 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 ZNF451Q9Y4E5 1061 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 SLC30A1Q9Y6M5 507 aa8.41□□□□□ -1.06
HMGB1P39-201ENST00000366304 C21orf140B9A014 251 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PRSS44E7EML9 344 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PDE2AO00408 941 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 DPM1O60762 260 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 FGF5P12034 268 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 BMP2P12643 396 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PTPN4P29074 926 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PPP1CAP62136 330 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 LRRC63Q05C16 580 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CDK18Q07002 472 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CBLBQ13191 982 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 NAA30Q147X3 362 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CCDC14Q49A88 953 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CCDC40Q4G0X9 1142 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 ACBD5Q5T8D3 534 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 ZNF658Q5TYW1 1059 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 DENND2CQ68D51 928 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PWWP2BQ6NUJ5 590 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 TTI2Q6NXR4 508 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 IYDQ6PHW0 289 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 TRIM65Q6PJ69 517 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CERS6Q6ZMG9 384 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 Q6ZVL8 140 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 TSPAN33Q86UF1 283 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 ZNF354CQ86Y25 554 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 ZDHHC17Q8IUH5 632 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 RASGRP3Q8IV61 690 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 LINC00528Q8N1L1 170 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 RTL3Q8N8U3 475 aaKnown RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 CASKIN2Q8WXE0 1202 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 THAP4Q8WY91 577 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 TBC1D31Q96DN5 1066 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 DTD2Q96FN9 168 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 TUBGCP5Q96RT8 1024 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 AGAP2Q99490 1192 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 SIX2Q9NPC8 291 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 PGPEP1Q9NXJ5 209 aa8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 SCHIP1Q9P0W5 487 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P39-201ENST00000366304 DIDO1Q9BTC0 2240 aaKnown RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 WASH4PA8MWX3 477 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 FOXN3O00409 490 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 E2F3O00716 465 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNF185O15231 689 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 LRCH4O75427 683 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 HEXIM1O94992 359 aaKnown RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNF202O95125 648 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 TYRP1P17643 537 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ERCC5P28715 1186 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 CDH5P33151 784 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 CA5AP35218 305 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 SCNN1AP37088 669 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 HDAC4P56524 1084 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 UBE2IP63279 158 aaKnown RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 DHX9Q08211 1270 aaKnown RBP8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 KCNAB1Q14722 419 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 CDO1Q16878 200 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 MIIPQ5JXC2 388 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ISM2Q6H9L7 571 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 DPY19L2P1Q6NXN4 242 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ARHGAP36Q6ZRI8 547 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 ZNF295-AS1Q8N0V1 137 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 SLC38A9Q8NBW4 561 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 JOSD2Q8TAC2 188 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 GPT2Q8TD30 523 aa8.39□□□□□ -1.07
HMGB1P39-201ENST00000366304 C18orf8Q96DM3 657 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms