RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ITGA9Q13797 1035 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 GRM3Q14832 879 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 GRAMD4Q6IC98 578 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 CALML6Q8TD86 181 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 HACD3Q9P035 362 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 PCDHB9Q9Y5E1 797 aa13.12□□□□□ -0.31
SQSTM1-201ENST00000360718 A0A0U1RQS6 177 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 C2orf81A6NN90 581 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 ARNTLO00327 626 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 TIMM44O43615 452 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PIGNO95427 931 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 HSPA4LO95757 839 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 APOA4P06727 396 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 SRPRAP08240 638 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MAGEA12P43365 314 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 RPL26P61254 145 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 ST8SIA6P61647 398 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PRAMEP78395 509 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 CCDC85BQ15834 202 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PTPRNQ16849 979 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 UGP2Q16851 508 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 CARD16Q5EG05 197 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PPM1JQ5JR12 505 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MTSS1LQ765P7 747 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 Q7L0L9 218 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 STRA8Q7Z7C7 330 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 CAMK1DQ8IU85 385 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 KBTBD2Q8IY47 623 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PHTF2Q8N3S3 785 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 DCLK2Q8N568 766 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 ZNF483Q8TF39 744 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MTG2Q9H4K7 406 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 KCTD3Q9Y597 815 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 SPO11Q9Y5K1 396 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 TICRRQ7Z2Z1 1910 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MEI4A8MW99 385 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GOLGA8TH3BQL2 631 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 AURKAO14965 403 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 LDB2O43679 373 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PGLSO95336 258 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 POP4O95707 220 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 ARNTP27540 789 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GDI1P31150 447 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 OPRD1P41143 372 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GRIA4P48058 902 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 HK2P52789 917 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 RUNX3Q13761 415 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 TAF1AQ15573 450 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MYLK3Q32MK0 819 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 PGM2L1Q6PCE3 622 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 SLC30A9Q6PML9 568 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GLT6D1Q7Z4J2 308 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 OR6Y1Q8NGX8 325 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 STYXQ8WUJ0 223 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GBP5Q96PP8 586 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 TUBGCP5Q96RT8 1024 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 AGAP2Q99490 1192 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 GAS2L1Q99501 681 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 SH3GL3Q99963 347 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 CDH19Q9H159 772 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 CD207Q9UJ71 328 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 RIMKLBQ9ULI2 386 aa13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 MUC22E2RYF6 1773 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-201ENST00000360718 TCF20Q9UGU0 1960 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ENO4A6NNW6 628 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ZNF195O14628 629 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 BUD23O43709 281 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 FZD6O60353 706 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 GJA4P35212 333 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ARCN1P48444 511 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 PRKAA2P54646 552 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 CSE1LP55060 971 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 BTKQ06187 659 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ASPHQ12797 758 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 PTPRCAPQ14761 206 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 EPGNQ6UW88 154 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 Q6ZVU0 165 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 DHDDSQ86SQ9 333 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 PLPP6Q8IY26 295 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 POU5F2Q8N7G0 328 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ZNF366Q8N895 744 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 OR6P1Q8NGX9 317 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 SLC26A7Q8TE54 656 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 TSNARE1Q96NA8 513 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 CPEB1Q9BZB8 566 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 PPM1HQ9ULR3 514 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ARL5AQ9Y689 179 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 A0A096LPK6 155 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 TTC34A8MYJ7 566 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 CCL22O00626 93 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 SLC7A4O43246 635 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 TRIM13O60858 407 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 ECI2O75521 394 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 LYNP07948 512 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 KCNA5P22460 613 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 VASPP50552 380 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 HTR4Q13639 388 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 FSTL4Q6MZW2 842 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 NEPROQ6NW34 567 aa13.1□□□□□ -0.31
SQSTM1-201ENST00000360718 DPY19L3Q6ZPD9 716 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms